publications list

• S.O.F protocol for nuclei isolation from fresh and frozen tissues using OptiPrep® discontinuous gradient

  • Luciano G Martelotto ¹
  • ¹ Harvard Medical School

• C-SOP-601: Operation of the Illumina MiSeq for Whole Genome Sequencing (WGS)

  • Mihir Kekre ¹
  • ¹ The Centre for Genomic Pathogen Surveillance, Oxford, United Kingdom

• C-SOP-501: Normalisation and Pooling of DNA Libraries for Illumina Whole Genome Sequencing

  • Mihir Kekre ¹
  • ¹ The Centre for Genomic Pathogen Surveillance, Oxford, United Kingdom

• C-SOP-401: Quality Control (QC) of DNA Libraries for Whole Genome Sequencing

  • Mihir Kekre ¹
  • ¹ The Centre for Genomic Pathogen Surveillance, Oxford, United Kingdom

• C-SOP-301: DNA Library Preparation using the NEBNext Ultra II FS DNA Kit (≥100 ng DNA input)

  • Mihir Kekre ¹
  • ¹ The Centre for Genomic Pathogen Surveillance, Oxford, United Kingdom

• VALAP protocol

  • Elizabeth Fozo ¹
  • ¹ In-house protocol

• Transformation electroporation

  • Elizabeth Fozo ¹
  • ¹ In-house protocol

• TD test protocol 9/26/19

  • Elizabeth Fozo ¹
  • ¹ In-house protocol

• Preparation of oxalate reagent

  • Yingyu YY Hu ¹ ,
  • Zoe V Finkel
  • ¹ Dalhousie University

• C-SOP-202: Genomic DNA Purity Measurement using a Nanodrop Spectrophotometer

  • Mihir Kekre ¹
  • ¹ The Centre for Genomic Pathogen Surveillance, Oxford, United Kingdom

• C-SOP-201: Genomic DNA Quantification using a Qubit Fluorometer

  • Mihir Kekre ¹
  • ¹ The Centre for Genomic Pathogen Surveillance, Oxford, United Kingdom

• Site Directed Mutagenesis 2016

  • Elizabeth Fozo ¹
  • ¹ In-house protocol

• C-SOP-101: Bacterial Genomic DNA Isolation using the Nexttec 1-step Kit (96-plate format)

  • Mihir Kekre ¹
  • ¹ The Centre for Genomic Pathogen Surveillance, Oxford, United Kingdom

• Food4Gut multicenter randomized placebo-controlled trial.

  • Sophie Hiel ¹ ,
  • Marco A. Gianfrancesco ² ,
  • Julie Rodriguez ,
  • Daphnée Portheault ³ ,
  • Quentin Leyrolle ,
  • Laure B. Bindels ,
  • Carolina Gomes da Silveira Cauduro ,
  • Maria D.G.H. Mulders ,
  • Giorgia Zamariola ,
  • Anne-Sophie Azzi ,
  • Gaetan Kalala ,
  • Barbara D. Pachikian ,
  • Camille Amadieu ,
  • Audrey M. Neyrinck ,
  • Audrey Loumaye ,
  • Patrice D. Cani ,
  • Nicolas Lanthier ,
  • Pierre Trefois ,
  • Olivier Klein ,
  • Olivier Luminet ,
  • Jérôme Bindelle ,
  • Nicolas Paquot ,
  • Miriam Cnop ,
  • Jean-Paul Thissen ,
  • Nathalie M. Delzenne
  • ¹ Université Catholique de Louvain
  • ² Université de Liège
  • ³ Université Libre de Bruxelles

• C-SOP-901: Preparation of DNA Isolates for Domestic and Overseas Transport

  • Mihir Kekre ¹
  • ¹ The Centre for Genomic Pathogen Surveillance, Oxford, United Kingdom

• Punch incision versus elliptical excision for epidermal inclusion cysts Systematic review and meta-analysis_protocol

  • Kengo KM Mukuda ¹ ,
  • Jun Watanabe ²
  • ¹ Division of Infectious Diseases, Tottori University
  • ² Division of Community and Family Medicine, Jichi Medical University

• XPRIZE SANATA Protocol for Saliva LFIA Test

  • Mario Thomas ¹ ,
  • Jasmine Sollen ,
  • Natalia Ivanova ,
  • Michelle Feng ,
  • Reda Fayek ,
  • Heidi Abdilla ,
  • Stephanie Lim ,
  • Amanda Naaum ,
  • Holly J Rumery ,
  • Mario Escobar
  • ¹ Precision Biomonitoring Inc.

• Protocol for Electronic von Frey

  • Lani Tieu ¹ ,
  • Lauren Smith ,
  • Olivier George
  • ¹ University of California, San Diego

• EPM with room set-up and results

  • Lieselot Carrette ¹ ,
  • Marsida Kallupi ,
  • Olivier George ²
  • ¹ UCSD
  • ² University of California, San Diego

• Western for Brain Punches

  • Olivier George ¹ ,
  • Lieselot Carrette ,
  • Francisco J Ramirez
  • ¹ University of California, San Diego

• XCMS Analysis of Untargeted Mass Spec Data

  • Olivier George ¹ ,
  • Sierra Simpson
  • ¹ University of California, San Diego

• GNPS Untargeted Metabolomics Workflow 

  • Sierra Simpson ¹ ,
  • Olivier George
  • ¹ University of California, San Diego

• Scintillation Count of radiolabeled whole cell

  • Elizabeth Fozo ¹
  • ¹ In-house protocol

• Nucleic acid precipitation

  • Elizabeth Fozo ¹
  • ¹ In-house protocol

• NAO staining

  • Elizabeth Fozo ¹
  • ¹ In-house protocol

• A Brief Look of the Evolutionary History of Cardiolipin Synthesis Pathway

  • 181830691 ¹
  • ¹ Washington & Jefferson College

• Single-step generation of genetic reporter lines using CRISPR/Cas9 and transient antibiotic selection

  • Carles Calatayud ¹ ,
  • William Serkin ² ,
  • Patrik Verstreken
  • ¹ VIB-KU Leuven Center for Brain & Disease, Leuven, Belgium
  • ² VIB-KU Leuven Center for Brain & Disease, Leuven, Belgium; Northeastern University, Boston, USA.

• Zebrafish (Danio rerio) Environmental Summary, Aquatic Resources Program, Boston Children's Hospital 2020

  • Christian Lawrence ¹ ,
  • Jason Best ,
  • Althea James ,
  • Shane Hurley ,
  • Mitchel Shia ,
  • Michelle Urh ,
  • Brady Hirshfeld ,
  • Nina Bakker ,
  • Hugo Perdomo ,
  • Aaron Krueger ²
  • ¹ Boston Children's Hospital
  • ² Worcester Polytechnic Institute

• Differences in supraspinatus occupation ratio betweenthe symptomatic, the contralateral asymptomatic shoulder and control subjects: A cross-sectional study.

  • snl ¹
  • ¹ University of Granada

• BEAST v1.X tutorial: Mammalian timetree

  • kawaoso ¹
  • ¹ Soichi Osozawa