publications list

• scFFPE-ATAC for high-throughput single cell chromatin accessibility profiling in formalin-fixed paraffin-embedded samples

  authors
  • Ram Prakash Yadav¹,
  • Pengwei Xing,
  • xingqi chen
  • ¹Department of Immunology, Genetics and Pathology, Uppsala University, Uppsala, Sweden

• JAX-Sen: Extraction of Bulk RNA from Mouse Placenta

  authors
  • Ramalakshmi Ramasamy¹,
  • Riley Sheldon,
  • Paul Robson²
  • ¹The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA
  • ²The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA; Department of Genetics and Genome Sciences, University of Connecticut School of Medicine, Farmington, CT, USA

• JAX-Sen: Single Cell Dissociation of Mouse Placenta

  authors
  • Ramalakshmi Ramasamy¹,
  • Riley Sheldon,
  • Cole Lorig,
  • Jessica Garofalo,
  • Patrick Fleming,
  • Juliana Alcoforado Diniz,
  • Eric Loucks,
  • Paul Robson²
  • ¹The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA
  • ²The Jackson Laboratory for Genomic Medicine, Farmington, CT, USA; Department of Genetics and Genome Sciences, University of Connecticut School of Medicine, Farmington, CT, USA

• JAX-Sen: Placenta collection, processing, and shipment protocol

  authors
  • Alicia Warren¹,
  • Vicki Ingalls,
  • Susan Sheehan
  • ¹The Jackson Laboratory, Bar Harbor, ME, USA

• Smart spatial omics (S2-omics) optimizes region-of-interest selection to capture molecular heterogeneity in diverse tissues

  authors
  • Musu Yuan¹,
  • Kaitian Jin,
  • Hanying Yan,
  • Amelia Schroeder,
  • Chunyu Luo,
  • Sicong Yao,
  • Bernhard Domoulin²,
  • Jonathan Levinsohn,
  • Tianhao Luo,
  • Jean R. Clemenceau³,
  • Inyeop Jang,
  • Minji Kim,
  • Yunhe Liu⁴,
  • Minghua Deng⁵,
  • Emma E. Furth⁶,
  • Parker Wilson,
  • Anupma Nayak,
  • Idania Lubo⁷,
  • Luisa Maren Solis Soto,
  • Linghua Wang,
  • Jeong Hwan Park⁸,
  • Katalin Susztak,
  • Tae Hyun Hwang,
  • Mingyao Li
  • ¹Statistical Center for Single-Cell and Spatial Genomics, Department of Biostatistics, Epidemiology and Informatics, Perelman School of Medicine, University of Pennsylvania Philadelphia, PA, USA.
  • ²Renal, Electrolyte, and Hypertension Division, Department of Medicine, University of Pennsylvania, Perelman School of Medicine, Philadelphia, PA 19104, United States.
  • ³Department of Surgery, Vanderbilt University Medical Center, Nashville, TN, USA.
  • ⁴Department of Genomic Medicine, University of Texas MD Anderson Cancer Center, Houston, TX, USA.;The University of Texas MD Anderson Cancer Center UTHealth Houston Graduate School of Biomedical Sciences, Houston, USA.;The James P. Allison Institute, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.;Institute for Data Science in Oncology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.
  • ⁵Center for Quantitative Biology, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing, China.
  • ⁶Department of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, United States.
  • ⁷Department of Translational Molecular Pathology, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.
  • ⁸Department of Pathology, Seoul Metropolitan Government-Seoul National University Boramae Medical Center, Seoul National University College of Medicine, Seoul, Republic of Korea.