Sep 13, 2024
Western blotting of Syp-VAMP2 complex
- Caroline Brown1,
- Snehasish Ghosh1,
- Kallol Gupta1
- 1Yale University
Protocol Citation: Caroline Brown, Snehasish Ghosh, Kallol Gupta 2024. Western blotting of Syp-VAMP2 complex. protocols.io https://dx.doi.org/10.17504/protocols.io.kqdg32doev25/v1
License: This is an open access protocol distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited
Protocol status: Working
We use this protocol and it's working
Created: September 13, 2024
Last Modified: September 13, 2024
Protocol Integer ID: 107592
Keywords: throughput analysis of the membrane proteome, membrane proteome, membrane protein, aspect of membrane protein, synaptic vesicle mp, endogenous membranes into native nanodisc, library of membrane, different organellar membranes with high efficiency, purification of target mp, different organellar membrane, membrane, native membrane, endogenous organellar membrane at physiological expression level, local membrane context, endogenous organellar membrane, vital local membrane context, unique mammalian mp, endogenous membrane, local molecular context, vamp2 complex the intricate molecular environment, extraction of target mp, intricate molecular environment, syp, other bioanalytical approach, purification
Funders Acknowledgements:
ASAP
Abstract
The intricate molecular environment of the native membrane profoundly influences every aspect of membrane protein (MP) biology. Despite this, the most prevalent method of studying MPs uses detergent-like molecules that disrupt and remove this vital local membrane context impeding our ability to quantitatively decipher the local molecular context. Using a library of membrane-active polymers we have developed a platform for the high-throughput analysis of the membrane proteome enabling near-complete spatially-resolved extraction of target MPs directly from their endogenous membranes into native nanodiscs that maintain the local membrane context. We accompany this advancement with an open-access database that quantifies the polymer-specific extraction variability for 2065 unique mammalian MPs and provides the most optimized condition for each of them. Our method enables rapid and near-complete extraction and purification of target MPs directly from any endogenous organellar membrane at physiological expression levels. To further validate this platform, we took several independent MPs and demonstrated how our resource can enable rapid extraction and purification of target MPs from different organellar membranes with high efficiency and purity. Further, taking two synaptic vesicle MPs, we show how the database can be extended to capture multiprotein complexes between overexpressed MPs. We expect these publicly available resources to empower researchers across disciplines to efficiently capture membrane ‘nano-scoops’ containing a target MP and interface with structural, functional, and other bioanalytical approaches.
Troubleshooting
Reagents needed for protocol
Acquire the following antibodies for the Western blotting protocol:
Primary Antibody: rabbit Na/K ATPase (Abcam Cat# ab167390, 1:5000)
Primary Antibody: Synaptophysin Rabbit mAb (ABClonal Cat#A19122, 1:5000)
Primary Antibody: VAMP2 Rabbit mAb (ABClonal Cat#A4235, 1:5000)
Secondary Antibody: HRP Goat Anti-Rabbit IgG (H+L) (ABClonal Cat#AS014, 1:10000)
Running the gel and transfer
Measure protein concentration with Bradford Kit, dilute into 4x Laemmli buffer to bring final concentration to 1x, and load to a 4-20%Mini-PROTEAN TGX precast gel.
Run the gel until the loading dye front runs off the ends of the gel.
Using a TurboBlot system, transfer gel onto a PVDF membrane.
Blotting
1h
Block membrane in 5% milk for 01:00:00 and wash with TBST
1h
Incubate with the primary antibody at the appropriate concentration listed above Overnight at 4 °C
Wash with TBST
Incubate with the secondary antibody at the concentration listed above for 01:00:00 and wash with TBST
1h
Add HRP and detect chemiluminescence using an ImageQuant system.