Oct 04, 2023
UPitt TriState SenNet TMC FFPE Specimen Section
- John Sembrat1,
- Marta Bueno1
- 1Division of Pulmonary and Critical Care Medicine. Department of Medicine. School of Medicine
- TriState SenNet
- Cellular Senescence Network (SenNet) Method Development Community
Protocol Citation: John Sembrat, Marta Bueno 2023. UPitt TriState SenNet TMC FFPE Specimen Section . protocols.io https://dx.doi.org/10.17504/protocols.io.q26g7pxz8gwz/v1
License: This is an open access protocol distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited
Protocol status: Working
We use this protocol and it's working
Created: October 03, 2023
Last Modified: October 04, 2023
Protocol Integer ID: 88707
Keywords: FFPE, upitt tristate sennet tmc ffpe specimen section, research histology pitt biospecimen core, eosin stain, hematoxylin, upitt tristate sennet tmc, ffpe block, analysis of the ffpe block, ffpe, eosin, stain
Funders Acknowledgements:
TriState SenNET (Lung and Heart) Tissue Map and Atlas consortium - NIA
Grant ID: U54AG075931
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Abstract
To perform imaging analysis of the FFPE blocks were submitted to hematoxylin and eosin stain. Initially FFPE blocks were prepare by the Research Histology Pitt Biospecimen Core and kept at room temperature (preserved from light) until sectioning.
Guidelines
- Sectioning is generally improved when the specimen and the wax are well matched in hardness. It is for this reason that most paraffin blocks must be cold
when sections are cut.
- The choice of slide and adhesive will be influenced by the staining methods to be subsequently applied.
- It is important to remove accumulated tissue debris and wax after use. Regular preventative maintenance is important
Safety warnings
- Use universal safety precautions when handling human samples and personal protective equipment (e.g., face mask with shield, gloves, lab coat or apron).
- You must be familiar with the safety features of the microtome you are using and observe some basic safety rules when cutting sections.
Before start
- Monitor the water bath temperature carefully. The temperature will need to be 5 ‑ 9 ˚C below the melting point of the wax. Make sure the water is clean and free of bubbles and section waste (to avoid cross‑contamination).
- Make sure the appropriate slides are ready.
Section Collection
1h 30m
Using a Histo-Quill Pen, hand label all slides with project number and block ID (add type of stain if needed) .
Ensure paraffin block is at room temperature.
Place block into holder of microtome.
Use clean, sharp microtome knife or disposable blade.
Use forceps or brush instead of your fingers to pick up sections or wax fragments from blade or block face.
The knife or blade should be removed from the microtome when the instrument is left unattended or when cleaning the instrument. It can then be grasped with forceps (not fingers) or picked up with the magnet at the end of a brush and safely removed. Used blades should be disposed of appropriately in a “sharps” container.
Set blade clearance to the optimal clearance angle & orient the specimen in the appropriate position.
Cut section to a 5 μm thickness. 5 µm sections
Note: Dip block face into molten paraffin to seal the tissue and allow to cool before storage.
Float paraffin ribbons on deionized H2O (or RNase-free H2O), heated to just below the melting point of the paraffin being used (usually 42 °C ).
Mount sections on slide by slowly bringing the flat side of slide up from underneath the floating tissue section, so that the tissue section is centered in the membrane window.
Place slide at an angle to allow water to drain and incubate sample at room temperature for 01:30:00 .
1h 30m
Slides can now be stored at room temperature for future use.
Proceed with staining protocol (if needed).