Oct 04, 2022
Version 2
Transfer of plasmid DNA to Rhodobacter sphaeroides via Conjugal mating V.2
- Jaya Yakha1,
- laible 1,
- Deborah K Hanson1,
- Rosemarie Wilton1
- 1Argonne National Laboratory
Protocol Citation: Jaya Yakha, laible , Deborah K Hanson, Rosemarie Wilton 2022. Transfer of plasmid DNA to Rhodobacter sphaeroides via Conjugal mating. protocols.io https://dx.doi.org/10.17504/protocols.io.ewov1oydolr2/v2Version created by Jaya K Yakha
License: This is an open access protocol distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited
Protocol status: Working
We use this protocol and it's working
Created: October 04, 2022
Last Modified: October 04, 2022
Protocol Integer ID: 70831
Keywords: transfer of plasmid dna, sphaeroides via conjugal mating rhodobacter, conjugal mating rhodobacter, transfer of plasmid, plasmid dna, rhodobacter host, endogenous restriction enzyme, cloning, sites for endogenous restriction enzyme, plasmid, rhodobacter, capable of conjugal mating, stranded dna, conjugal mating, dna, conjugation, hosts restriction system, efficient way of transfer, enzyme, transfer, sphaeroide, rhodobacter sphaeroides via conjugal mating rhodobacter, rhodobacter sphaeroide
Abstract
Rhodobacter is not capable of being transformed with pure, double-stranded DNA containing sites for endogenous restriction enzymes. The most efficient way of transfer of plasmid DNA to expression hosts is conjugation where single stranded DNA is transferred bypassing the hosts restriction system. The common E. coli strains used in cloning do not contains components necessary for the mobilization and transfer of plasmids via conjugal mating. In order to enable transfer of the expression vector to Rhodobacter hosts, an E coli host that is capable of conjugal mating (For e.g. S17-10 must be utilized).
Materials
- 15 ml sterile tubes
- Flask
- 1 ml microcentrifuge tubes
- Sterile glass beads
- Competent cells (E.coli S17-1 cells)
- Ice
- Shaker incubator at 370C
- Incubator at 370C
- Media plate with appropriate Antibiotic selection
- 2xTY plates
- GYCC plates
- MR26 plates
- Centrifuge
- Filter paper
- Sterile tooth pick
- Sterile forceps
Two days prior to the conjugation, inoculate 25 ml of GYCC with desired host strain and grow at 33 °C with shaking at 125 rpm. If culture becomes too turbid prior to the conjugation, sub culturing may be necessary.
The night before the conjugation, inoculate the donor strain of S17-1 (pXYZ) in 3 mL of growth medium containing antibiotic specific to the plasmid vector. We use the S17-1 strain of E coli because it has the genes necessary for the mobilization and transfer of plasmids.
The morning of the conjugation, pre warm 2xTY plates in 37 °C incubator (typically use 1.5’’ small round petri dishes). Sub-culture the overnight S17-1 (pXYZ) culture in the fresh medium without drug; Let it grow to log phase (approx. 2 hours). Dilute cells 1:50 into fresh medium (take 40 ul of cell and in 2ml of 2xTY medium). After subculture has reached the log phase, conjugation procedure is ready to begin.
In a sterile microfuge tube mix 1ml of the recipient host strain with 35 ul of donor S17-1(pXYZ) culture and spin for about 00:00:30 at max speed. Decant the supernatant.
30s
In a sterile hood, place a 13mm nitrocellulose filter on the surface of the pre warmed 2XTY plate by using sterile tweezers. Resuspend the cells in the remaining medium using a filtered pipette tip and spot the mixture on top of the filter paper. Incubate at37 °C for at least 03:00:00 (Note time). While these are incubating it is good idea to pre warm the agar plates to be used later.
3h
At the end of the incubation period, take the plate back to the sterile hood and remove filter from the plate piercing with a sterile tooth pick and transfer into the falcon 2059 (15 ml) tube that contains 1 mL of MR26 medium. Vortex to dislodge all the cells from the filter paper.
Transfer the resuspended cell mixture into microcentrifuge tube.
Dilute the resuspended cell mixtre to 1:50 (2ul of cell and 98 ul of medium) to the fresh MR26 medium and plate 50 µL of GYCC agar plate containing medium with antibiotic selection at the desired concentration.
Incubate the plate(s) in a 33 °C incubator. After about 3 days colonies should be observable.
Check colonies under microscope to ensure no contamination.
Media required and components
GYCC
| A | B | |
| Ingredients | g/L | |
| Yeast extract | ||
| Casamino acids | 6 g | |
| Concentrated base (see below for preparation) | 5 ml |
Adjust PH to 7.1 with NaOH Autoclave 30 mins in liquid cycle
2xTY
| A | B | |
| Ingredients | g/L | |
| Tryptone | 16 g | |
| Yeast extract | 10 g | |
| NaCl | 5 g |
Fill to 1L with ddH2O Autoclave 30 mins in liquid cycle
MR26
(A) Potassium phosphate buffer, 1M PH = 6.8 adjusted with KOH or H3PO4
K2HPO4 115g/L
KH2PO4 44.9g/L
(B) Ammonium succinate, 1M PH= 6.8
Dissolve 118 g of succinic acid in 500 ml H2O. Adjust the PH to 6.8 with ammonium hydroxide (It will take quite a bit) and add H2O.
(C) Concentrated base: Add the following in order to ~500 ml H2O, then when everything is dissolved, fill with H2O to 1L. PH = 6.8 adjusted with NH4OH.
EDTA-Na2 (dihydrate) 11.16 g
(NH4)6Mo7O24.4H2O 0.0093 g
FeSO4.7H2O 0.099 g
“Metals 44” 50 ml
MgSO4 14.5 g
CaCl2 2.5 g
Use 20 ml of A, B and C per L of MR26 medium.
*Vitamin stock solution is usually made up separately.
Vitamin solution for 50 ml
*nicotinic acid 0.075 g
Nicotinamide 0.075 g
*Thiamine0. 150 g
Biotin 0.003 g
Filter sterilize
Metals 44 – per L of stock solution
FeSO4.7H2O 5 g
Na2-EDTA (Dihydrate) 6.5 g
ZnSO4 10.9 g
MnCl2.4H2O 1.3 g
CuSO4.5H2O 0.392 g
CoCl2.6H2O 0.2 g
H3BO3 0.114 g
Autoclave 30 min in liquid cycle
Add vitamins with antibiotic when needed