
| Product | Quantity | Part # | |
| Transcreener® GDP FP Assay | 1,000 assays* | 3009-1K | |
| 10,000 assays* | 3009-10K |
| Component | Composition | Notes | |
| GDP Antibody | 3.1 mg/mL solution in PBS with 10% glycerol* | The concentration of GDP Antibody needed for an enzyme target is dependent upon the GTP concentration and buffer conditions in the enzyme reaction (see Section 4.2). Sufficient antibody is included in the kit to complete 1,000 assays (Part # 3009-1K) or 10,000 assays (Part 3009-10K) at a GTP concentration up to 100 µM. | |
| GDP Alexa Fluor® 633 Tracer | 400 nM solution in 2 mM HEPES (pH 7.5) containing 0.01% Brij-35 | The final tracer concentration in the 20 µL reaction is 2 nM. | |
| Stop & Detect Buffer B, 10X | 200 mM HEPES (pH 7.5), 400 mM EDTA, and 0.2% Brij-35 | The Stop & Detect Buffer B components will stop enzyme reactions that require Mg2+. To ensure that the enzyme reaction is stopped completely, confirm that the EDTA concentration is at least equimolar to the magnesium ion concentration in the reaction. The final concentration of Stop & Detect Buffer B at the time of FP measurement is 0.5X. | |
| GTP | 5 mM | The GTP supplied in this kit can be used for the enzyme reaction and to create a GDP/GTP standard curve, if desired. | |
| GDP | 5 mM | GDP is used to create the GDP/GTP standard curve. |
| Component | Stock Concentration | Complete Assay Concentration | Example: 25 Assays | Your Numbers | |
| GDP Antibody | 3.1 mg/mL | 20 µg/mL | 3.2 µL | ||
| 10X Stop & Detect Buffer B | 10X | 0.5X | 25.0 µL | ||
| GDP Alexa Fluor® 633 Tracer | 400 nM | 2 nM | 2.5 µL | ||
| Water | 469.3 µL | ||||
| Total | 500.0 µL |
| Component | Stock Concentration | Complete Assay Concentration | Example: 25 Assays | Your Numbers | |
| 10X Stop & Detect Buffer B | 10X | 0.5X | 25.0 µL | ||
| GDP Alexa Fluor® 633 Tracer | 400 nM | 2 nM | 2.5 µL | ||
| Water | 472.5 µL | ||||
| Total | 500.0 µL |
| Component | Notes | |
| 0% GTP Conversion Control | This control consists of the GDP Detection Mixture, the enzyme reaction components (without enzyme), and 100% GTP (0% GDP). It defines the upper limit of the assay window. | |
| 100% GTP Conversion Control | This control consists of the GDP Detection Mixture, the enzyme reaction components (without enzyme), and 100% GDP (0% GTP). It defines the lower limit of the assay window. | |
| Minus-Nucleotide Control and Minus-Substrate Control | To verify that the enzyme does not interfere with the detection module, perform an enzyme titration in the absence of nucleotide (i.e., GTP) or acceptor substrate. | |
| GDP/GTP Standard Curve | Although optional, a GDP/GTP standard curve can be useful to ensure day-to-day reproducibility and that the assay conditions were performed using initial rates. It can also be used to calculate product formed and inhibitor IC50 values. See Section 7.1 for a description of how to run the standard curve. | |
| Background Control | Use only 0.5X enzyme reaction conditions and Stop & Detect Buffer B. |
| A | Stock Concentration | Detection Mixture Concentration | Example | Your Numbers | |
| GDP Antibody | 3.1 mg/mL | 5 µg/µL | 16.1 µL | ||
| GDP Alexa Fluor® 633 Tracer | 400 nM | 4 nM | 100 µL | ||
| 10X Stop & Detect Buffer B | 10X | 1X | 1,000 µL | ||
| Water | 8,883.9 µL | ||||
| Total | 10,000 µL |
| Component | Notes | |
| Minus Antibody (Free Tracer) Control | This control contains the GDP Alexa Fluor® 633 Tracer without the GDP Antibody and is set to 20 mP. | |
| Minus Tracer Control | This control contains the GDP Antibody without the GDP Alexa Fluor® 633 Tracer and is used as a sample blank for all wells. It contains the same GDP Antibody concentration in all wells. |
| Problem | Possible Causes and Solutions | |
| Low selectivity | Suboptimal antibody concentration
| |
| No change in FP observed | Low antibody/tracer activity
| |
| High background signal | Nonproductive GTP hydrolysis
|
| % Conv. | GTP (µM) | GDP (µM) | |
| 100 | 0 | 100 | |
| 60 | 40 | 60 | |
| 40 | 60 | 40 | |
| 30 | 70 | 30 | |
| 20 | 80 | 20 | |
| 15 | 85 | 15 | |
| 10 | 90 | 10 | |
| 8 | 92 | 8 | |
| 6 | 94 | 6 | |
| 4 | 96 | 4 | |
| 2 | 98 | 2 | |
| 0 | 100 | 0 |