Jan 17, 2017

Public workspaceThe Healthy Brain Network Serial Scanning Initiative, Sessions 2-7 and 9-14 V.2

GigaScience
DOI
https://dx.doi.org/10.17504/protocols.io.gxubxnw
  • David O'Connor,
  • Natan Vega Potler,
  • Meagan Kovacs,
  • Ting Xu,
  • Lei Ai,
  • John Pellman,
  • Tamara Vanderwal,
  • Lucas Parra,
  • Samantha Cohen,
  • Satrajit Ghosh,
  • Jasmine Escalera,
  • Natalie Grant-Villegas,
  • Yael Osman,
  • Anastasia Bui,
  • R Cameron Craddock,
  • Michael P Milham
  • GigaScience Press
David O'connor
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DOI: https://dx.doi.org/10.17504/protocols.io.gxubxnw
External link: https://doi.org/10.1093/gigascience/giw011
Protocol Citation: David O'Connor, Natan Vega Potler, Meagan Kovacs, Ting Xu, Lei Ai, John Pellman, Tamara Vanderwal, Lucas Parra, Samantha Cohen, Satrajit Ghosh, Jasmine Escalera, Natalie Grant-Villegas, Yael Osman, Anastasia Bui, R Cameron Craddock, Michael P Milham 2017. The Healthy Brain Network Serial Scanning Initiative, Sessions 2-7 and 9-14. protocols.io https://dx.doi.org/10.17504/protocols.io.gxubxnw
Manuscript citation:
David O'Connor, Natan Vega Potler, Meagan Kovacs, Ting Xu, Lei Ai, John Pellman, Tamara Vanderwal, Lucas C. Parra, Samantha Cohen, Satrajit Ghosh, Jasmine Escalera, Natalie Grant-Villegas, Yael Osman, Anastasia Bui, R. Cameron Craddock, Michael P. Milham, The Healthy Brain Network Serial Scanning Initiative: a resource for evaluating inter-individual differences and their reliabilities across scan conditions and sessions, GigaScience, Volume 6, Issue 2, February 2017, giw011, https://doi.org/10.1093/gigascience/giw011
License: This is an open access protocol distributed under the terms of the Creative Commons Attribution License,  which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited
Protocol status: Working
Created: January 11, 2017
Last Modified: November 09, 2017
Protocol Integer ID: 4820
Keywords: healthy brain network serial scanning initiative, questionnaires for session, voice recoding, session, mri, questionnaire, basic physiological measurement
Abstract
This protocol describes MRI, voice recoding, and some basic physiological measurements and questionnaires for Sessions 2-7 and 9-14 of the following work:
David O'Connor, et. al. (2017) The Healthy Brain Network Serial Scanning Initiative. GigaScience...
Troubleshooting
Before start
Participant offered use of restroom, preganancy test administered to female participants on V14 if they are of childbearing age, and consent is acquired
Pre-Scan
Internal State Questionnaire - 3-item self-report questionnaire assessing hunger and thirst. Participants respond on a visual analogue scale ranging from "I am not hungry/thirsty/full at all" to "I have never been more hungry/thirsty/full". Responses are rated from 0-100. Participants complete this questionnaire before and after each scan.
Note
Before Start: Participant offered use of restroom, preganancy test administered to female participants on V14 if they are of childbearing age, and consent is acquired
Blood collected with capillary stick, blood pressure recorded, blood glucose recorded, pulse recorded
Note
DUA required for this data
Audio samples of participant speech were recorded prior to scanning. Each sample consisted of 10 sentences with 5 different implicit emotions (neutral, happy, sad, angry, fearful), 10 non-words, and 2 minutes of free speech. For each sample different sentences were drawn from the same set of emotions; the non-words also differed in each sample but had similar characteristics (ie number of syllables, chunks). Stimuli were presented on a laptop computer screen. Completion of the sample took up to 15 minutes.
Note
Not Shared, pending appropriate de-identification procedure
First day of last period recorded for females
Note
DUA required for this data
Participant is scanned for magnetic materials, asked to change into scrubs if necessary, and enters the MRI machine
Scan
Localizer
Note
Not Shared, calibration only
Head Motion training - participant is scanned using an fmri sequence, and presented with visual feedback based on the amount their head moves.
Note
Not Shared, for training purposes only
Localizer
Note
Not Shared, calibration only
Resting State - stimuli and scan protocol shared online (http://fcon_1000.projects.nitrc.org/indi/hbn_ssi/index.html)
Inscapes - stimuli and scan protocol shared online (http://fcon_1000.projects.nitrc.org/indi/hbn_ssi/index.html)
Movie Segment - stimuli specified but not shared online and scan protocol shared online (http://fcon_1000.projects.nitrc.org/indi/hbn_ssi/index.html)
Flanker - stimuli and scan protocol shared online (http://fcon_1000.projects.nitrc.org/indi/hbn_ssi/index.html)
HCP Task - particpant was scanned with fmri sequence while performing one of seven tasks used in the Human Connectome project (http://www.humanconnectome.org/documentation/Q1/task-fMRI-protocol-details.html)
Note
Not Shared, data is not complete
Story Corps - participant was scanned with fmri sequence, while watching and/or listening to anectodal short stories from story corps (https://storycorps.org/)
Note
Not Shared, in process of organizing, will be shared at a later date
B0 field map
T1 weighted Multiecho MPRAGE - scan protocol shared online (http://fcon_1000.projects.nitrc.org/indi/hbn_ssi/index.html)
MSIT/Visual Audio Motor Tasks/Breath Hold Multiband fMRI Sequence - particiapants performed one of; the Multi Source Interference Task, Visual Checkerboard - Audio Beep - Fingertapping task, or a breath hodling task while being scanned with a mutliband fmri sequence
Note
Not Shared, data is not complete
Post-Scan
Removed from Scanner
Internal State Questionnaire - 3-item self-report questionnaire assessing hunger and thirst. Participants respond on a visual analogue scale ranging from "I am not hungry/thirsty/full at all" to "I have never been more hungry/thirsty/full". Responses are rated from 0-100. Participants complete this questionnaire before and after each scan.
New York Cognition Questionnaire - 31-item self-report questionnaire that asks participants about the different thoughts and feelings that they may have had while in the MRI scan. Participants are asked to indicate the extent to which their thinking or experience corresponded to each item on a 9-point scale.
PANAS - The PANAS-S is a self-administered, 20-item Likert scale assessment that measures degree of positive or negative affect. Users are asked to rate 10 adjectives that measure positive feelings such as joy or pleasure, and 10 adjectives that measure negative feelings, such as anxiety or sadness, on a scale of how closely the adjective describes them in the present moment or over the past week. Items are rated on a five-point scale.
Note
DUA required for this data
Quotient (on V9 only) - Quotient is a computer based task designed to assess three core symptoms of ADHD: hyperactivity, attention and impulsivity. Participants respond to stimuli presented with random timing and random placement on a screen. Completion of the task takes up to 30 minutes.
Note
DUA required for this data