Sep 11, 2024
Subcellular Fractionation
- Szu-Chi Liao1,
- Mohamed Taha Moutaoufik2,
- Ken Nakamura1
- 1Gladstone Institutes;
- 2Department of Chemistry and Biochemistry, University of Regina
External link: https://doi.org/10.1126/sciadv.adu0726
Protocol Citation: Szu-Chi Liao, Mohamed Taha Moutaoufik, Ken Nakamura 2024. Subcellular Fractionation. protocols.io https://dx.doi.org/10.17504/protocols.io.4r3l2q4y3l1y/v1
Manuscript citation:
Liao S, Kano K, Phanse S, Nguyen M, Margolis E, Fu Y, Meng JX, Moutaoufik MT, Chatterton Z, Saccon T, Broderick K, Aoki H, Simms J, Suteja FX, Sei Y, Huang EJ, McAvoy K, Manfredi G, Halliday G, Babu M, Nakamura K CHCHD2 mutant mice link mitochondrial deficits to PD pathophysiology. Science Advances 11(46). doi: 10.1126/sciadv.adu0726
License: This is an open access protocol distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited
Protocol status: Working
We use this protocol and it's working
Created: April 25, 2024
Last Modified: September 11, 2024
Protocol Integer ID: 98819
Keywords: ASAPCRN, subcellular fractionation, total cell lysate into cytosolic, total cell lysate, soluble vs insoluble fraction, insoluble fraction, cell, cytosolic
Funders Acknowledgements:
ASAP
Grant ID: 020529
Abstract
To isolate total cell lysate into cytosolic and mitochondrial, soluble vs insoluble fractions.
Materials
- Cell scraper
- 1X PBS
- Glass pestle
- Isolation medium (250 mm sucrose, 1 mm EDTA and 10 mm Tris–MOPS, pH 7.4)
- Microcentrifuge tubes
- Ultracentrifuge
- Triton X-100
- Ice
- SDS buffer (50 mm Tris, 2% SDS, pH 7.6)
Troubleshooting
Harvest cells with a scraper.
Resuspend PBS and centrifuge at 500g for 5 min.
Homogenize using a glass pestle in isolation medium.
Centrifuge at 600 g for 10 min at 4°C.
Transfer the supernatant to a new microcentrifuge tube and centrifuge at 9,000 g for 10 min at 4°C.
Transfer the supernatant (cytosolic fraction) to a new microcentrifuge tube.
Resuspend the pellet with isolation medium.
Centrifuge at 9,000 g for 10 min at 4°C.
Repeat step 7 and 8 for a total of 3 times.
The final pellet is collected as the mitochondrial fraction.
Add Triton X-100 to both cytosolic and mitochondrial fractions to a final concentration of 1%.
Incubate mixture from both fractions on ice for 30 min.
Centrifuge at 20,000 g for 10 min at 4°C.
Transfer the supernatant (soluble fraction) to a new microcentrifuge tube.
Incubate the pellet in SDS buffer for 30 min.
Centrifuge at 20,000g for 10 min at room temperature.
The final solution is the insoluble fraction.