Feb 24, 2025
STEPanizer calibration
- Leidyanne Hernandez1,
- Caroline Fernandes-Santos1
- 1Federal Fluminense University
- NemenuthTech. support email: [email protected]
External link: https://youtu.be/AqefP3AyLvc
Protocol Citation: Leidyanne Hernandez, Caroline Fernandes-Santos 2025. STEPanizer calibration. protocols.io https://dx.doi.org/10.17504/protocols.io.dm6gpz8k5lzp/v1
Manuscript citation:
Gonçalves LF, Rosa BR, Ramos ITT, et al. Impact of Mesotherapy with Sodium Deoxycholate on Liver: Metabolic- and Sex-Specific Insights in Swiss mice. An Acad Bras Cienc. 2025;97(1):e20240363. Published 2025 Feb 7. doi:10.1590/0001-3765202520240363
License: This is an open access protocol distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited
Protocol status: Working
We use this protocol and it's working.
Created: April 05, 2024
Last Modified: February 24, 2025
Protocol Integer ID: 97813
Keywords: STEPanizer, Calibration, Stereology, Histology, Pathology, stepanizer calibration stepanizer, stepanizer, stereological evaluation of digital image, stereological formulas into excel, stereological evaluation, microscope, digital image, stereological formula, software, essential stereological parameter, excel, test system, step, image, macroscopic device
Funders Acknowledgements:
FAPERJ
Grant ID: E-26/010.001892/2019
Disclaimer
The authors declare that there are no conflicts of interest associated with this protocol.
Abstract
STEPanizer is a software designed for the stereological evaluation of digital images acquired from microscopes and macroscopic devices. It allows the application of the most essential stereological parameters, such as volume, surface, length, and number. The user must configure a test system that is projected onto the digital image to be analyzed. Counting is made by the observer and computed into the software, which then tabulates the data and exports it to Excel. The operator must enter the stereological formulas into Excel to obtain the result. STEPanizer is helpful because it standardizes the creation of test systems. However, before all that, the primary step is to calibrate the software to obtain proper data.
Image Attribution
Authors.
Materials
- Micrometer object digital image
- Computer
Troubleshooting
Before start
- An image of the micrometer object acquired in the same magnification as the images to be analyzed is required.
Software calibration
Click on "browse" and open the image of the micrometer object (#1)
Click on "scale" (#2).
On the "input field" enter the desired value (#3).
Click on the image and drag the mouse to draw a line of the size that corresponds to the value entered (#4).
Note
- Draw a large line. For instance, instead of 100 μm, draw a 500 μm line as in the example;
- Ruler marks are thick in higher magnification. Thus, when drawing the line, position its ends at the center of each ruler mark or at the beginning.
Click on "scale ok" (#5).
Calibration will be shown in the "info field" #6 (in the example, 1 pixel = 1.0916 μm).
Note
- The test system dimensions will also be displayed in the "info field" #6, based on the test system settings you configured on "test system properties" (#7).
- The calibration and test system properties are saved when the program is closed. Thus, always check the info field (#6) before analyzing a new set of images.
- Always perform a new calibration when changing the image source (e.g., new objective or new microscope).
- Click "reset all & close!" to delete the calibration. It will also delete the test system settings.
Protocol references
Tschanz S A; Burri P H; Weibel E R. A simple tool for stereological assessment of digital images: the STEPanizer. J Microsc, v. 243, n. 1, p. 47-59. 2011. doi:10.1111/j.1365-2818.2010.03481.x