Jul 08, 2020

Public workspaceSoil_property_data_for_cocci_model

PLOS One
DOI
dx.doi.org/10.17504/protocols.io.bibakaie
  • Robert Dobos1,
  • Orion Z. McCotter2,
  • Brendan R. Jackson3,
  • Kaitlin Benedict3
  • 1USDA-NRCS;
  • 2OHA;
  • 3CDC
Robert Dobos
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DOI: dx.doi.org/10.17504/protocols.io.bibakaie
External link: https://doi.org/10.1371/journal.pone.0247263
Document Citation: Robert Dobos, Orion Z. McCotter, Brendan R. Jackson, Kaitlin Benedict 2020. Soil_property_data_for_cocci_model. protocols.io https://dx.doi.org/10.17504/protocols.io.bibakaie
Manuscript citation:
Dobos RR, Benedict K, Jackson BR, McCotter OZ (2021) Using soil survey data to model potential Coccidioides soil habitat and inform Valley fever epidemiology. PLoS ONE 16(2): e0247263. doi: 10.1371/journal.pone.0247263
License: This is an open access document distributed under the terms of the Creative Commons Attribution License,  which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited
Created: July 08, 2020
Last Modified: July 08, 2020
Document Integer ID: 38978
Keywords: coccidioides, ssurgo, soil survey,
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Abstract
This spreadsheet contains the soil property data extracted by the data extraction property scripts used by the cocci habitat suitabiity model. Since the methods are rather arcane, it was thought best to provide the data that is ultimately fed into the membership functions of the model. The major components of each soil mapping unit in the western United States are included. The data was extracted from the NASIS transactional database 20 June 2020, and reflect the data present at that time. The states reported are Arizona, California, Colorado, Idaho, Kansas, Montana, Nebraska, Nevada, New Mexico, North Dakota, Oklahoma, Oregon, South Dakota, Texas, Utah, Washington and Wyoming. These are the states thought to have at least some area hot, dry, and salty enough for cocci to exist.
StateSoil_Survey_AreaArea_NameMap_Unit_SymbolNational_MusymMap_Unit_NameComponent_NameComp_PctComponent_KindDrainage_ClassMukeyHabitat_Suitability_IndexEC dS/m 0-30cmSAR 0-30cmGypsum (%) 0-30cmSoil reaction min 0-30cmMAP (mm)MAAT (deg C)Water gathering surfaceCumulative Saturation (months)Months pondingOrganic carbon (kg/m2)Water retention diff (%)AlbedoSlope (%)Aspect factorXeric limiterAridic limiterXeric climate
Column headers for the data table

Actual soil property data starts at Column M. The preceding columns are for reference. This file is not aggregated to the map unit level and so each major soil component is listed for multi-taxa map units. This allows one to see how each component (soil in a county) rates.
Download major_components_western_us.xlsxmajor_components_western_us.xlsx