Jun 13, 2023
Sectioning of Mouse Brain by Cryostat
- 1Northwestern University, Aligning Science Across Parkinson's (ASAP) Collaborative Research Network, Chevy Chase, MD 20815
Protocol Citation: maryana.nissan 2023. Sectioning of Mouse Brain by Cryostat. protocols.io https://dx.doi.org/10.17504/protocols.io.5jyl8prw7g2w/v1
License: This is an open access protocol distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited
Protocol status: Working
We use this protocol and it's working
Created: June 13, 2023
Last Modified: May 31, 2024
Protocol Integer ID: 83276
Keywords: ASAPCRN, mouse brain by cryostat, slice mouse brain sections for immunohistochemistry, slice mouse brain section, cryostat, immunohistochemistry, mouse brain, mouse
Funders Acknowledgements:
Aligning Science Across Parkinson's [ASAP-020600] through the Michael J. Fox Foundation for Parkinson's Research (MJFF)
Grant ID: ASAP-020600
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Abstract
This protocol describes how to use the cryostat to prepare and slice mouse brain sections for Immunohistochemistry
Preparation Methods
After removing the brain from -80C storage, leave the brain on dry ice for 15-20 minutes. This will ensure there is not a big temperature difference when it is placed in the chamber of the cryostat. The cryostat my lab uses is Leica, model CM-30505.
Label microscope slides. For embryonic brains, you will need between 8 to 10 slides. For early post-natal brains, you will need up to 10 slides and for adult brains, you will need 13-15 slides.
Set the chamber temperature (CT) and object temperature (OT). My lab often works with -24C for CT and -21C for OT. The temperature will take a few minutes to set.
CT and OT Screen
When the temperatures of the cryostat are set, begin mounting the brain.
Place a disposable base mold [Fisher brand, CAT# 22-038-272] on the stand.
Fill half of the plate with embedding media
Gently transfer brain from dry ice to the center of the plate, securing it. Make sure to place it in the orientation you’d like.
Fill up the rest of the plate with embedding media. Note, when the embedding media freezes, it will turn white. This will make it difficult to tell the orientation of the brain. To prevent this, label the orientation of the brain on the plate.
Place the plate under the cold press and press it to cool. Leave the press on the plate for 2-5 minutes.
Lift the cold press, releasing the plate
Remove the block from the plate. Now, you will have a frozen block.
Place the block on the concentric circle, and secure it with more embedding media
Attach the concentric circle to the stand, and secure it by tightening the screw above it
Setup inside of cryostat
Prior to slicing, double check the settings. Make sure you have the correct thickness
Slicing Methods
The cryostat can be run at an automated setting to section off the extra embedding media covering the brain. To do this, adjust the speed and thickness. Double press “RUN STOP” and “RUN ENABLE” to begin automated setting
Settings of Cryostat
Adjust the settings of the stand as needed to ensure that the blade is slicing full sections of the brain
Let the cryostat section the brain and occasionally stop it by double pressing “RUN STOP” and “RUN ENABLE” to brush off the embedding media on the stand
Stop the automated settings when you notice the cryostat has reached the brain. Begin manually collecting the brain sections.
Carefully mount each brain section onto a microscope slide by slightly tilting the slide over the brain section and pressing down. Be careful to not break the section, press down gently to lift the brain section.
Continue collecting sections until you have sliced the entirety of the brain
Store slides at -80C