
| A | B | C | D | E | F | G | H | I | |
| WORM ID | Avg Ct (dmrt1) | Avg Ct (psmt) | Avg Ct (18S) | ∆Ct dmrt1 | ∆Ct psmt | Sex Score | SEX (RT-qPCR) | SEX (RNA-seq) | |
| G11 | 25.8 | 22.09 | 23.95 | 16.34 | 12.63 | 3.71 | female | female | |
| G7 | 27.25 | 24.61 | 25.93 | 13.87 | 11.23 | 2.64 | female | female | |
| G10 | 23.25 | 30.42 | 26.83 | 8.36 | 15.54 | -7.17 | male | male | |
| G12 | 31.7 | 28.28 | 29.99 | 14.37 | 10.95 | 3.42 | female | N/A | |
| G3 | 27.09 | 22.93 | 25.01 | 16.13 | 11.97 | 4.15 | female | female | |
| V4 | 32.41 | 33.13 | 32.77 | 11.8 | 12.52 | -0.72 | male | N/A | |
| V3 | 31.39 | 35.8 | 33.59 | 5.02 | 9.43 | -4.41 | male | N/A | |
| V10 | 21.42 | 28.83 | 25.13 | 3.78 | 11.19 | -7.41 | male | male | |
| V1 | 24.03 | 32.28 | 28.16 | 5.31 | 13.56 | -8.25 | male | male | |
| V5 | 30.53 | 29.31 | 29.92 | 13.08 | 11.87 | 1.22 | female | female | |
| V9 | 30.02 | 28.19 | 29.11 | 14.74 | 12.9 | 1.83 | female | female | |
| G2 | 29.92 | 25.66 | 27.79 | 13.48 | 9.23 | 4.26 | female | female | |
| V6 | 29.64 | 25.89 | 27.77 | 12.81 | 9.05 | 3.75 | female | female | |
| V8 | 24.28 | 30.5 | 27.39 | 7.28 | 13.5 | -6.22 | male | male | |
| V7 | 28.99 | 27.86 | 28.42 | 12.29 | 11.15 | 1.14 | female | female | |
| V12 | 24.61 | 28.71 | 26.66 | 7.47 | 11.58 | -4.1 | male | male |
| A | B | C | D | |
| Category | Item | Notes | Suggested Vendor / Cat number (Cat.) | |
| Consumables | Microcentrifuge tubes | RNase-free | Any laboratory supplier | |
| RT-qPCR plates | Compatible with qPCR instrument | Bio-Rad or equivalent | ||
| Optical plate seals | Microseal | Bio-Rad/ Cat. MSB1001 | ||
| Pipette tips | RNase-free | filtered | ||
| RNA extraction reagents and kits | Arcturus PicoPure RNA isolation Kit | For low-input RNA samples | Applied Biosystems/ Cat. KIT0204 | |
| TRIzol Reagent | For higher-input RNA extraction | Invitrogen/ Cat. 15596026 | ||
| Rneasy Mini Kit | For RNA clean up | Qiagen/ Cat. no. 74104 | ||
| Enzymes / reagents | RNase-Free DNase Set | On-column DNase treatment | Qiagen/ Cat. no. 79254 | |
| cDNA synthesis kit options | 1st Strand cDNA Synthesis Kit for RT-PCR (AMV) | For cDNA synthesis | Sigma-Aldrich/ Cat. no. 11483188001 | |
| High-Capacity RNA-to-cDNA | For cDNA synthesis | Applied Biosystems/ Cat. no. 4387406 | ||
| RT-qPCR master mix | SsoAdvanced Universal SYBR Green Supermix | For RT-qPCR reactions | Bio-Rad/ Cat. No. 1725271 | |
| Molecular biology reagent | Nuclease-free water | For reactions and dilutions | Any laboratory supplier | |
| Equipment | Microcentrifuge | With plate adapters if needed | Any laboratory supplier | |
| Refrigerated centrifuge | Optional for RNA work | Any laboratory supplier | ||
| qPCR instrument | Capable of melt curve analysis | Bio-Rad or equivalent | ||
| NanoDrop or spectrophotometer | For RNA quantification | Thermo Fisher Scientific or equivalent |
| A | B | C | D | |
| Primer | Sequence | Tm | Suitability | |
| 18S-RPR-F | TAGAGTGTTCAAGGCAGGCG | 60.04 | PCR/ qPCR | |
| 18S-RPR-R | CCACCAACTAAGAACGGCCA | 60.25 | PCR/ qPCR | |
| Pdu-actin-RPR-F | AAGATCTTGACCGAGCGTGG | 60.11 | PCR/ qPCR | |
| Pdu-actin-RPR-R | GATGGAGCCAAGGCAGTGAT | 60.11 | PCR/ qPCR | |
| Pdu-dmrt1-Q1-F | CGCCCCTGATCAAAGGCCAA | 63.12 | PCR | |
| Pdu-dmrt1-Q1-R | AAGGCTGAACCGAGCTGCTG | 63.07 | PCR | |
| Pdu-dmrt1-Q6-F | TGGCACAAGCATGCAAGCAC | 62.7 | PCR | |
| Pdu-dmrt1-Q6-R | GGCCGACGCTCTCAATGGAT | 62.65 | PCR | |
| Pdu-psmt-Q1-F | CCAGGGCTGTGCCAACATCT | 62.78 | PCR | |
| Pdu-psmt-Q1-R | CGGGATGTGTTCCGCCACTT | 63.08 | PCR | |
| Pdu-psmt-Q4-F | GGATGCTTGCCATGGTTGCC | 62.58 | PCR | |
| Pdu-psmt-Q4-R | CACTCGGCCGTTGCTAACCT | 62.78 | PCR | |
| Pdu-lrcct-Q1-F | ACGGTCTCTCCAACCGACCA | 62.99 | PCR | |
| Pdu-lrcct-Q1-R | TCCCGGAAGTCGGAACCAGT | 63.01 | PCR | |
| Pdu-lrcct-Q2-F | TCCAAGCAGGAGGGGGAGAC | 63.12 | PCR | |
| Pdu-lrcct-Q2-R | AGAAGCCCTGAAGGTCCGGT | 63.04 | PCR | |
| Pdu-kctd21-Q4-F | TTGGGCAACTTGGGCAGACA | 62.58 | PCR | |
| Pdu-kctd21-Q4-R | CAGGCCCAAGGCTGTTGGTA | 62.42 | PCR | |
| Pdu-kctd21-Q5-F | TGGTTGGGCAACTTGGGCAG | 63.56 | PCR | |
| Pdu-kctd21-Q5-R | AATGTTCAGCGACAGGCCCA | 62.41 | PCR | |
| Pdu.psmt-b1-F | TCTGGTGGATGGTGTGAGGA | 60.18 | PCR/ qPCR | |
| Pdu.psmt-b1-R | TAATGGCCACGTCCATCTCC | 59.53 | PCR/ qPCR | |
| Pdu.psmt-b2-F | ATGGTGTGAGGAAACAGCCA | 59.52 | PCR/ qPCR | |
| Pdu.psmt-b2-R | GGCCACGTCCATCTCCAAA | 60 | PCR/ qPCR | |
| Pdu.psmt-si1-m1-F | CATGTCCCTTGAAGTGGCGG | 61.31 | PCR/ qPCR | |
| Pdu.psmt-si1-m1-R | GTCGCACAATGTTGCTCAAGT | 60 | PCR/ qPCR | |
| Pdu.psmt-si1-m2-F | GTCCCTTGAAGTGGCGGAA | 59.93 | PCR/ qPCR | |
| Pdu.psmt-si1-m2-R | GCATGTCGCACAATGTTGCT | 60.39 | PCR/ qPCR | |
| Pdu-dmrt.si1.D1-F | CTTGCCACTACGACCTGGAG | 60.11 | PCR/ qPCR | |
| Pdu-dmrt.si1.D1-R | AGCCTGTTCTTGGGCATGTT | 60.18 | PCR/ qPCR | |
| Pdu-dmrt.si3.D2-F | CGTAATCCGGATGAGAGCCC | 60.04 | PCR/ qPCR | |
| Pdu-dmrt.si3.D2-R | TCGTAGTGGCAAGCCTTCAA | 60.32 | PCR/ qPCR | |
| Pdu-dmrt.si3.D3-F | CCGTAATCCGGATGAGAGCC | 60.04 | PCR/ qPCR | |
| Pdu-dmrt.si3.D3-R | AGCTCGGTTCAGCCTTTTCT | 59.61 | PCR/ qPCR |
| A | B | C | D | E | F | G | |
| Target | Forward | Reverse | Ta (°C) | Slope | Efficiency (%) | Best use | |
| psmt | Pdu.psmt-b1-F | Pdu.psmt-b1-R | 60 | -3.5 | 93.07 | RT-qPCR | |
| psmt | Pdu.psmt-b2-F | Pdu.psmt-b2-R | 60 | -3.45 | 94.92 | RT-qPCR | |
| psmt | Pdu.psmt-si1-m1-F | Pdu.psmt-si1-m1-R | 60 | -3.58 | 90.25 | RT-qPCR | |
| psmt | Pdu.psmt-si1-m2-F | Pdu.psmt-si1-m2-R | 60 | -3.47 | 94.17 | RT-qPCR | |
| dmrt1 | Pdu-dmrt.si1.D1-F | Pdu-dmrt.si1.D1-R | 60 | -3.62 | 88.90 | PCR | |
| dmrt1 | Pdu-dmrt.si3.D2-F | Pdu-dmrt.si3.D2-R | 60 | -3.57 | 90.60 | RT-qPCR | |
| dmrt1 | Pdu-dmrt.si3.D3-F | Pdu-dmrt.si3.D3-R | 60 | -3.55 | 91.29 | RT-qPCR | |
| 18S | 18S-RPR-F | 18S-RPR-R | 60 | -3.11 | 110 | RT-qPCR | |
| actin | Pdu-actin-RPR-F | Pdu-actin-RPR-R | 60 | -3.11 | 110 | RT-qPCR | |
| dmrt1 | Pdu-dmrt1-Q1-F | Pdu-dmrt1-Q1-R | 60 | 0.561 | N/A | PCR | |
| dmrt1 | Pdu-dmrt1-Q6-F | Pdu-dmrt1-Q6-R | 60 | 0.357 | N/A | PCR | |
| psmt | Pdu-psmt-Q1-F | Pdu-psmt-Q1-R | 60 | -2.03 | 2.11 | PCR | |
| psmt | Pdu-psmt-Q4-F | Pdu-psmt-Q4-R | 60 | -1.73 | 2.78 | PCR | |
| lrrct | Pdu-lrcct-Q1-F | Pdu-lrcct-Q1-R | 60 | 0.499 | N/A | PCR | |
| lrrct | Pdu-lrcct-Q2-F | Pdu-lrcct-Q2-R | 60 | 0.667 | N/A | PCR | |
| kctd21 | Pdu-kctd21-Q4-F | Pdu-kctd21-Q4-R | 60 | 0.155 | N/A | PCR | |
| kctd21 | Pdu-kctd21-Q5-F | Pdu-kctd21-Q5-R | 60 | 0.144 | N/A | PCR |