Oct 29, 2020
Protocols for "Draft genome of the aquatic moss Fontinalis antipyretica (Fontinalaceae, Bryophyta)"
- Yang Liu1,
- Huan Liu1,
- Hongfeng Chen2,
- Bernard Goffinet3,
- Nikisha Patel3,
- Ziqiang Chen4,
- Shanshan Dong5,
- Sibo Wang1,
- Linzhou Li1,
- Jin Yu1
- 1State Key Laboratory of Agricultural Genomics, China National GeneBank, BGI-Shenzhen, Shenzhen 518083, China;
- 2South China Botanical Garden, Chinese Academy of Sciences, Guangzhou, China;
- 3Department of Ecology and Evolutionary Biology, University of Connecticut, Storrs, CT, 06269-3043, USA;
- 4College of Chinese Medicine Materials, Jilin Agricultural University, Changchun 130012, China;
- 5Laboratory of Southern Subtropical Plant Diversity, Fairy Lake Botanical Garden, Shenzhen & Chinese Academy of Sciences, Shenzhen 518004, China
- GigaScience Press
- BGI
External link: https://doi.org/10.46471/gigabyte.8
Collection Citation: Yang Liu, Huan Liu, Hongfeng Chen, Bernard Goffinet, Nikisha Patel, Ziqiang Chen, Shanshan Dong, Sibo Wang, Linzhou Li, Jin Yu 2020. Protocols for "Draft genome of the aquatic moss Fontinalis antipyretica (Fontinalaceae, Bryophyta)". protocols.io https://dx.doi.org/10.17504/protocols.io.bn7jmhkn
Manuscript citation:
Jin Yu, Linzhou Li, Sibo Wang, Shanshan Dong, Ziqiang Chen, Nikisha Patel, Bernard Goffinet, Hongfeng Chen, Huan Liu, Yang Liu, Draft genome of the aquatic moss Fontinalis antipyretica (Fontinalaceae, Bryophyta), Gigabyte, 2020 https://doi.org/10.46471/gigabyte.8
License: This is an open access collection distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited
Protocol status: Working
We use this protocol and it's working
Created: October 29, 2020
Last Modified: October 29, 2020
Collection Integer ID: 43979
Keywords: genome of the aquatic moss fontinalis antipyretica, third genome of moss, draft nuclear genome of fontinalis antipyretica, aquatic moss fontinalis antipyretica, charismatic aquatic moss widespread in temperate region, nuclear genome, charismatic aquatic moss, embryophyte, fontinalaceae, genome, third genome, extant vascular plant, moss, second genome, genes in the busco viridiplantae odb10 dataset, seedless aquatic plant, sister group to extant vascular plant, complementary insights into the evolution, fontinalis antipyretica, gene, lineage, temperate region
Abstract
Background:Mosses compose one of the three lineages that form the sister group to extant vascular plants. Having emerged from an early split in the diversification of embryophytes, mosses may offer complementary insights into the evolution of traits following the transition to and colonization of land. Here, we report the draft nuclear genome of Fontinalis antipyretica (Fontinalaceae, Hypnales), a charismatic aquatic moss widespread in temperate regions of the Northern Hemisphere. Wesequenced and de novo assembled its genome using the 10 × genomics method. The genome comprises 385.2 Mbp, with a scaffold N50 of 45.8 Kbp. The assembly captured 87.2% of the 430 genes in the BUSCO viridiplantae odb10 dataset.The newly generated F. antipyreticagenome is the third genome of mosses, and the second genome for a seedless aquatic plant.
