Mar 28, 2023
Protocol for Papillomavirus DNA extraction from cervical brushes using the Wizard® Genomic DNA Purification Kit
- Geórgia ackradt Rêgo1,
- Alice Leite2,
- Maryana Thalyta Ferreira Câmara de Oliveira3,
- Beatriz Helena Dantas Rodrigues de Albuquerque4,
- Larissa Alves Honorato Ferreira5,
- Yago Tomaz Vieira da Silva5,
- Eduardo Pereira de Azevedo6,
- Janaína erreira Aderaldo7,
- Daniel Carlos Ferreira Lanza8,
- Ricardo Ney Cobucci9
- 1Graduate program in sciences applied to women's health (PPGCASM), Federal University of Rio Grande do Norte (UFRN), Natal, RN, Brazil;
- 22Medical residency in gynecology and obstetrics, Maternity School Januário Cicco (MEJC), Federal University of Rio Grande do Norte (UFRN), Natal, RN, Brazil;
- 33Laboratory of Applied Molecular Biology - LAPLIC, Federal University of Rio Grande do Norte, Natal, RN, Brazil;
- 4Graduate Program in Biochemistry and Molecular Biology – PPGBqBM, Federal University of Rio Grande do Norte (UFRN), Natal, RN, Brazil. 5Graduate Program in Biotechnology (PPGB), Potiguar University (UnP), Anima, Natal, Brazil;
- 5Laboratory of Applied Molecular Biology - LAPLIC, Federal University of Rio Grande do Norte, Natal, RN, Brazil.;
- 6Graduate Program in Biotechnology (PPGB), Potiguar University (UnP), Anima, Natal, Brazil;
- 7Brazilian Company of Hospital Services (EBSERH), Maternity School Januário Cicco (MEJC), Federal University of Rio Grande do Norte (UFRN), Natal, RN, Brazil.;
- 8Graduate Program in Biochemistry and Molecular Biology – PPGBqBM, Federal University of Rio Grande do Norte (UFRN), Natal, RN, Brazil.;
- 9Graduate program in sciences applied to women's health (PPGCASM), Federal University of Rio Grande do Norte (UFRN), Natal, RN, Brazil.
Protocol Citation: Geórgia ackradt Rêgo, Alice Leite, Maryana Thalyta Ferreira Câmara de Oliveira, Beatriz Helena Dantas Rodrigues de Albuquerque, Larissa Alves Honorato Ferreira, Yago Tomaz Vieira da Silva, Eduardo Pereira de Azevedo, Janaína erreira Aderaldo, Daniel Carlos Ferreira Lanza, Ricardo Ney Cobucci 2023. Protocol for Papillomavirus DNA extraction from cervical brushes using the Wizard® Genomic DNA Purification Kit. protocols.io https://dx.doi.org/10.17504/protocols.io.8epv5jp94l1b/v1
License: This is an open access protocol distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited
Protocol status: Working
We use this protocol and it's working
Created: March 28, 2023
Last Modified: March 28, 2023
Protocol Integer ID: 79605
Keywords: protocol for papillomavirus dna extraction, papillomavirus dna extraction, extracting hpv dna, hpv dna from infected endocervical cell, hpv dna, hpv dna with the potential, dna from endocervical sample, dna extraction, risk hpv from cervical brush, enough material for dna extraction, cervical cancer, risk hpv, cervical brush, quality of the extraction, infected endocervical cell, extraction, extraction protocol, blood contamination, genomic dna, dna, endocervical sample, biological sample, average purification of the sample, endocervical brush, purification, endocervix, containing higher blood content
Abstract
DNA analysis for early diagnosis of cervical cancer is a promising alternative for greater treatment efficiency. Biological samples obtained from the endocervix are commonly used for diagnosis, even though such samples are still little explored in the molecular context. This work aims to describe a modified protocol for extracting HPV DNA from infected endocervical cells after collection with endocervical brushes. The Wizard® Genomic DNA Purification Kit (Promega, CAT.# A1125) was used to extract DNA from endocervical samples and the extraction protocol was adapted from the manufacturer's instructions. Forty-one samples were collected from women with a mean age of 35 ± 7.8 years. It was observed that samples containing higher blood content resulted in inhibiting the amplification signal, however, all samples had enough material for DNA extraction, despite the blood contamination. The quality of the extraction was confirmed in 100% of the samples with the amplification of the actin gene, indicating that enough DNA was extracted. Considering the absorbance ratio of 260/280, the average purification of the samples was reasonably good. The protocol was able to extract and detect HPV DNA with the potential to be used in the detection of high-risk HPV from cervical brushes with a high cost-effectiveness ratio.
Troubleshooting
COLLECTION OF SAMPLES
For the collection of endocervical material, the speculum is inserted into the vaginal canal
After viewing the cervix, the brush is introduced into the cervical canal
Then the brush is rotated 360 degrees by eight turns to the right and eight to the left in order
After collection, the brush is transferred to a clean collection tube and stored at -80 °C
DNA EXTRACTION
Add 600μl of Nuclei Lysis Solution to a 1.5 ml microcentrifuge tube free of DNAses, RNAses and pyrogens
Add the endocervical brush to the tube containing the Nuclei Lysis Solution and homogenize the sample by rotating the brush in the solution
Remove the brush and add 3µl of RNase Solution and mix the sample by inverting the tube 5 times
Incubate the mixture for 30 minutes at 37°C. Allow the sample to cool to room temperature for 5 minutes before proceeding
To the room temperature sample, add 200µl of Protein Precipitation Solution and vortex vigorously at high speed for 20 seconds. Chill sample on ice for 5 minutes
Centrifuge at room temperature at 14,000 x g for 4 minutes
Transfer supernatant to a fresh tube containing 600µl of room temperature 99.5% isopropanol
Mix gently by inversion and centrifuge for 1 minute at 14,000 × g at room temperature
Decant the supernatant and add 600µl of room temperature 70% ethanol, rinsing the tube walls and homogenizing by inversion
Centrifuge for 1 minute at 14,000 × g at room temperature and aspirate the ethanol
Invert the tube on clean absorbent paper, and air-dry the pellet for 15 minutes
Rehydrate the DNA in 100µl of DNA Rehydration Solution for 1 hour at 65°C. Periodically mix the solution by gently tapping the tube
Store the DNA at - 20°C