Aug 01, 2022

Public workspaceProduction of cellular reagents using IPTG

This protocol is a draft, published without a DOI.
Production of cellular reagents using IPTG
  • Shalo Minette1,
  • Jenny Molloy2,
  • Nadine Mowoh1,
  • Stephane Fadanka1
  • 1Beneficial Bio, Mboalab;
  • 2University of Cambridge, Beneficial Bio
  • Reclone.org (The Reagent Collaboration Network)
  • Beneficial Bio
Nadine Mowoh
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Protocol Citation: Shalo Minette, Jenny Molloy, Nadine Mowoh, Stephane Fadanka 2022. Production of cellular reagents using IPTG. protocols.io https://protocols.io/view/production-of-cellular-reagents-using-iptg-cegjtbun
License: This is an open access protocol distributed under the terms of the Creative Commons Attribution License,  which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited
Protocol status: Working
We use this protocol and it's working
Created: July 28, 2022
Last Modified: August 01, 2022
Protocol Integer ID: 67819
Keywords: Production of cellular reagents using IPTG, Protein expression in E.coli using IPTG, IPTG induction of protein expression in E.coli, production of cellular reagent, cellular reagent, using iptg, instructions for iptg, iptg this protocol document, iptg, reagent, common molecular biology enzyme, enzyme
Abstract
This protocol documents the production of cellular reagents.
Cellular reagents are defined as common molecular biology enzymes expressed in E.coli but not subsequently purified before use i.e. dried E.coli cells are used as the reagent (Bhadra et al (2018)).

This protocol provides instructions for IPTG (T7 based) expression.
Guidelines
This protocol describes the use of IPTG in inducing protein expression in E.coli BL 21 DE3 strain.
Materials
Equipment:
  • Static Incubator
  • Shaker incubator
  • Centrifuge
  • Micropipettes with sterile tips
  • Sterile PCR tube (8-strip tubes)
  • Sterile 1.5 mL Eppendorf tubes
  • Tupperware or Glass jars
  • Conical flask (50 mL and 250 mL)
  • Duran bottles
  • 10 µL wire loops
  • Thermocycler or Water bath
  • Spreader

Reagents:
  • Silica gel beads desiccant
  • PBS (Phosphate Buffered Saline) solution made using this protocol
  • 100 mg/ml Kanamycin solution made using this protocol
  • LB media and LB agar plate made up using this protocol
Troubleshooting
Safety warnings
Wear protective clothing (gloves, lab coat, face masks)
Before start
Ensure all materials and reagents needed are available and all culture media prepared.
Preparation of overnight starter culture

Note
To begin, we typically prepare an overnight starter culture from either a bacterial glycerol sock or agar plate.
From glycerol stock

  • Remove the glycerol stock from -20°C.
  • Open the tube and use a sterile loop, sterile toothpick or sterile pipette tip to scrape some of the frozen bacteria off the top. Do not let the glycerol stock thaw!
  • Streak onto LB agar plate which contains appropriate antibiotic, label with full details.
  • Return glycerol stock to freezer.
  • Incubate plate atTemperature37 °C DurationOvernight in a static incubator
  • Next day, check plate for growth of bacteria.
  • Prepare 5 mL LB broth plus appropriate antibiotic as described in this protocol.

e.g. 2.5µl 100 mg/mL Kanamycin stock in 5 mL LB broth, to give 50 µg/mL final kanamycin concentration.

  • Inoculate prepared 5 mL LB Broth + Antibiotic in a 50 mL Falcon tube with 1 E.coli colony from the overnight the plate.
  • Label and place the falcon tube in a shaking incubator at Temperature37 °C DurationOvernight
  • Store plate with colonies on at +4°C for up to 3 weeks.


From a pre-streaked plate

  • Remove the plate from +4°C
  • Use a wire loop to pick a colony from the plate
  • Inoculate a prepared 5 mL LB Broth + Antibiotic in a 50 mL Falcon tube with 1 E.coli colony from the plate
  • Label and place the falcon tube in shaking incubator at Temperature37 °C DurationOvernight
  • Store plate with colonies on at +4°C for up to 3 weeks.




Growth of main culture and preparation of cellular reagents
Growing main culture for IPTG-protein expression

  • Prepare 50 mL LB broth plus appropriate antibiotic in a 100 mL flask
  • Inoculate the 50 mL LB Broth + Antibiotic with Concentration0.5 % volume of the starter culture
e.g.250 µL of the overnight culture in 50 mL LB + Antibiotic
  • Grow at Shaker225 rpm, 37°C, 03:00:00 until A600 = 0.5
  • Induce expression by addingConcentration0.5 millimolar (mM) IPTG final concentration

Calculate the amount of IPTG as follows:

Amount of IPTG to add (µL) = concentration IPTG sought (mM) x volume of culture (µL)
Stock IPTG conc (mM)

e.g.Amount31.25 µL of Concentration0.8 Molarity (M) stock to Amount50 mL

  • Continue to incubate for Shaker225 rpm, 37°C, 03:00:00 .
  • Decant 1.5 mL (or desired volume depending on the tubes available) into centrifuge tubes or Eppendorf tubes.
  • Centrifuge at Centrifigation4000 rpm, 00:15:00 , pour off and discard the supernatant and keep the pellets at Temperature4 °C .
  • Now make another set of tubes: This set is to be used for SDS PAGE to confirm successful protein expression.



After confirming successful protein expression
Wash cells

  • Remove from the fridge the first set of tubes and resuspend cell pellet into 1.5 mL of cold PBS (vol of PBS = vol of harvested cell) – First wash

e.g. 1.5 mL harvested resuspend in 1.5 mL cold 1X PBS

  • Centrifuge at Centrifigation4000 rpm, 00:15:00
  • Perform second wash
  • Resuspend pellet into 1.5 mL of cold 1X PBS
Aliquoting
  • Measure A600 of a neat, 1:10 or 1:100 dilution. Multiply the value to get the actual final A600 number.

  • Calculate the volume of your final cell suspension that would contain 2 x 108 cells, using the equation: 

volume containing 2x108 cells = 200/final A600 of cell suspension.

e.g. if your final A600 is 6.5, then

volume containing 2x108 cells = 200/6.5
volume containing 2x108 cells = 31µL
Note
You can either aliquot ~2 x 107 cells (enough for a single PCR reaction) or 2 x 108 cells (enough for 10 PCR reactions) into individual 0.2 mL PCR tubes in order to prepare dried Taq cellular reagents.

  • Aliquot either single reaction or 10X reactions worth of cellular reagents into 8-tube strips of 0.2 mL PCR tubes.

e.g. using the example above, 3.1 µL (1x reaction) or 31 µL (10x).

Heating to kill the bacteria

  • Transfer the 0.2 mL PCR tubes into a thermocycler
  • Set a program for heating on the thermocycler at Temperature60 °C for Duration00:10:00 (leave some tubes unheated to serve as control and label the tubes accordingly).
Note
Where a thermocycler is unavailable, a Water bath can be used by setting the water bath to Temperature60 °C and immersing the tubes in it for Duration00:10:00


Drying

  • Leave tube lids open
  • Place the tube strips with pre- heated aliquoted cellular reagents carefully in a vacuum tupperware 1/2 filled with desiccant.
  • place the lid of the tupperware on top and close gently making sure it closes properly on all the sides
  • Use the vacuum pump to create a vacuum in the tupperware by pumping several times until the lid is visibly tough and sunken.
  • Place the container static incubator DurationOvernight at Temperature37 °C
  • After 18-24 hours check to see if the cellular reagents are completely dry.
  • Once dry, close the lids and place in a small bag at Temperature4 °C with a small amount of desiccant.

Note
  • We typically use this drying method to obtain cellular reagents that are stable for 3 to 6 months.
  • In settings where a Lyophilizer is available, it can be used to obtain cellular reagents that can remain functional for longer periods.



Check the effectiveness of the heating step

  • Reconstitute one of the pre-heated tubes with Amount30 µL PCR water
  • Mix by gently tapping onto the bottom of the tube and allow to stand for Duration00:05:00
  • Use a micropipette to aliquot Amount10 µL inoculate on an LB agar plate supplemented with Kanamycin (100 mg/mL)
  • Use a spreader to evenly spread the inoculum across the surface of the plate
  • Repeat the above steps but this time reconstituting the control tube (tubes where cells were not pre-heated)
  • Place both plates in a static incubator and incubated at Temperature37 °C DurationOvernight

Check plates:
  • The plate from pre-heated tubes should show no growth of bacteria confirming the complete killing of bacteria cells in cellular reagents making them safer to handle.
  • The plate from non-heated tubes should show visible growth of bacteria confirming the need to preheat cellular reagents at 60c for 10 mins before drying and subsequent use.

Quality control
Proceed to carry out quality control of this batch of cellular reagents by testing the functionality and assessing the them for endonuclease activity.
After passing the quality control test, the cellular reagents can be used in a PCR amplification reaction.