Nov 09, 2023
Preparation of Single Cell Suspension from Human Spleen Tissue
- Steven B. Wells1,
- Peter A. Szabo2
- 1Department of Systems Biology, Columbia University Irving Medical Center, New York, NY 10032, USA;
- 2Department of Microbiology and Immunology, Columbia University Irving Medical Center, New York, NY 10032, USA
- Columbia
Protocol Citation: Steven B. Wells, Peter A. Szabo 2023. Preparation of Single Cell Suspension from Human Spleen Tissue. protocols.io https://dx.doi.org/10.17504/protocols.io.bwq4pdyw
License: This is an open access protocol distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited
Protocol status: Working
We use this protocol and it's working
Created: July 20, 2021
Last Modified: November 09, 2023
Protocol Integer ID: 51708
Keywords: Spleen, CD45, Lymphocytes, Myeloid, Isolation, Density gradient, Ficoll, Immune, 10x, scRNAseq, Flow cytometry, Leukocyte, Single cell suspension, T cell,
Abstract
This protocol describes a method for the isolation of pan-lymphocytes, pan-myeloid cells, and progenitors from human spleen tissue. By providing defined media formulations, volumes at each step, and a defined dilution factor for density centrifugation, it yields consistent single-cell suspensions across samples.
Attachments
dzhhbk587.pdf
179KB
Materials
Materials:
- Fisherbrand™ Sterile Syringes for Single UseFisher ScientificCatalog #14955459
- DPBS no calcium no magnesiumThermo Fisher ScientificCatalog #14190144
- Penicillin-Streptomycin-Glutamine (100X)Thermo FisherCatalog #10378016
- Thermo Scientific™ Nunc™ 50mL Conical Sterile Polypropylene Centrifuge TubesFisher ScientificCatalog #12-565-271
- Gibco™ IMDM (Iscoves Modified Dulbeccos Medium)Fisher ScientificCatalog #12-440-053
- Gibco™ Fetal Bovine Serum qualified AustraliaFisher ScientificCatalog #10-099-141
- UltraPure™ 0.5M EDTA pH 8.0Fisher ScientificCatalog #15575020
- 100μM cell strainer (Fisher Scientific, Cat. No.: 50-146-1428)
- Ficoll-Paque™ PLUS MediaFisher ScientificCatalog #45-001-749
- Mr. Frosty™ Freezing ContainerFisher ScientificCatalog #5100-0001
- CryoStor CS10 100MLFisher ScientificCatalog #NC9930384
- Corning™ Externally Threaded Cryogenic VialsFisher ScientificCatalog #09-761-71
- 5mL Falcon™ Round-Bottom Polypropylene Test TubesFisher ScientificCatalog #14-959-11A
- Solution 13 AO – DAPIChemometecCatalog #910-3013
- NC-Slide A8™ box with 25 SlidesChemometecCatalog #942-0003
- Falcon™ Plastic Disposable Transfer PipetsFisher ScientificCatalog #1368050
Equipment:
- Centrifuge
- Cell Counter - NC-3000
- Surgical scissors
- Scale
Preparing Medium and Buffer
Preparing Medium and Buffer
Create the following IMDM-FBS-PSQ Media in a 500 mL bottle of IMDM by using the table below:
| A | B | C | D | |
| Component | Volume (mL) | Starting Conc. | Final Conc.* | |
| IMDM | 500 | - | - | |
| Penicillin-Streptomycin-Glutamine | 5 | 100X | 1X | |
| FBS | 50 | 100% | 10% |
Table 1.
*Final Concentration is approximate.
Create the following DPBS-FBS-EDTA Solution in a bottle of DPBS without calcium and magnesium by using the table below:
| A | B | C | D | |
| Component | Volume (mL) | Starting Conc. | Final Conc.* | |
| DPBS | 500 | - | - | |
| FBS | 25 | 100% | 5% | |
| EDTA | 1 | 0.5M | 1mM |
Table 2.
*Final Concentration is approximate.
Tissue Dissociation
Tissue Dissociation
Add 2 ± 10% grams of spleen tissue to a 50 mL centrifuge tube and record below.
__________g
Add 5 mL of DPBS-FBS-EDTA Solution to the spleen tissue and use a scissors to chop the tissue into a fine “mash”.
Add 35 mL of DPBS-FBS-EDTA Solution to the mash of tissue, and distrubute and filter the tissue over 100 micromolar (µM) cell strainers above 50 mL tubes (about 4 filters/2 grams of tissue).
Note
NOTE: Cell yields and ease of pushing through the filter are increased by using multiple filters/gram of tissue, default to using more filters to decrease processing time, and increase yields.
Apply pressure with the black rubber bottom or the plastic end of a 10 mL syringe plunger to any remaining, partially digested tissue on the cell strainers, and intermittently wash through with DPBS-FBS-EDTA Solution from a transfer pipet – the aim is to push and wash through the tissue until only pink/white connective tissue remains. When finished, combine the tubes of cell suspension and proceed to the next section.
Ficoll-Paque
Ficoll-Paque
50m
50m
Centrifuge the cell suspensions for 00:10:00 at 400 x g at 20 °C .
10m
Remove the supernatants and combine the cell pellets down to a single 50 mL tube, top to 50 mL with Room temperature DPBS-FBS-EDTA Solution.
Filter the cell suspension through a 100 micromolar (µM) cell strainer.
In two 50 mL tubes, layer 25 mL of cell suspension on top of 15 mL of Ficoll-Paque Media PLUS.
Spin for 00:20:00 , 1200 x g at 20 °C with 4 acceleration and 0 brake, evenly distribute the tubes across the entire rotor to prevent wobbling (use all four buckets if possible as opposed to just two).
20m
Remove the mononuclear cell layer from both tubes with a transfer pipet and combine in one 50 mL tube. Add cold DPBS-FBS-EDTA Solution to a final volume of 50 mL and centrifuge the cell suspension for 00:10:00 at 400 x g , 4 °C .
10m
Remove the supernatants and re-suspend the cell pellets in 50 mL cold DPBS-FBS-EDTA Solution and centrifuge the cell suspension for 00:10:00 at 120 x g , 4 °C .
10m
Remove the supernatant and re-suspend the cell pellet in cold 10 mL IMDM-FBS-PSQ Media.
Cell Count
Cell Count
Count cells, and viability by using the NC-3000 cell counter. Calculate total viable cells and record below:
cell number: ___________cells/mL, ___________% viable
final volume:__________ mL
𝑐𝑒𝑙𝑙 𝑛𝑢𝑚𝑏𝑒𝑟 (𝑐𝑒𝑙𝑙𝑠/𝑚𝐿) ∗ 𝑣𝑖𝑎𝑏𝑖𝑙𝑖𝑡𝑦(%) ∗ 𝑓𝑖𝑛𝑎𝑙 𝑣𝑜𝑙𝑢𝑚𝑒(𝑚𝐿) = 𝑡𝑜𝑡𝑎𝑙 𝑣𝑖𝑎𝑏𝑙𝑒 𝑐𝑒𝑙𝑙𝑠
Total Viable Cells: _____________
Freeze-down and QC
Freeze-down and QC
(Optional QC) Aliquot 2 x 106 cells to a 5mL Falcon tube and place on ice for subsequent flow cytometric analysis.
Aliquot cells for analysis or experimentation, and then freeze down cells in up to 3 x 107 aliquots using Cryostor CS10 Medium, a Mr. Frosty, and a -80 °C freezer (1 mL -1.5 mL aliquots, round down to the nearest 30 million cells and discard/freeze/use any left over cells). Record the number of vials frozen: __________.