Mar 09, 2023
Preparation of 1L of Foraging Buffer
- Alfonso Pérez Escudero1,
- Alid Al-Asmar1,
- gabrielmadirolas 1
- 1Research Centre on Animal Cognition (CRCA), Centre for Integrative Biology (CBI), Toulouse III University, CNRS, Toulouse, France
Protocol Citation: Alfonso Pérez Escudero, Alid Al-Asmar, gabrielmadirolas 2023. Preparation of 1L of Foraging Buffer. protocols.io https://dx.doi.org/10.17504/protocols.io.j8nlkw28xl5r/v1
License: This is an open access protocol distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited
Protocol status: Working
We use this protocol and it's working
Created: February 21, 2023
Last Modified: March 09, 2023
Protocol Integer ID: 77373
Keywords: foraging buffer protocol, experiments with the worm caenorhabditis elegan, buffer protocol, foraging experiment, foraging medium, worm caenorhabditis elegan, buffer, using different strain, bacteria, preparation, bacteriostatic concentration, bacterial strain, antibiotics at bacteriostatic concentration, preparation of 1l
Funders Acknowledgements:
Human Frontier Science Program
Grant ID: LT000537/2015
CNRS Momentum Program
Fyssen Foundation Research Grant
Gore Family Foundation start-up grant
SEVAB PhD School (Toulouse III University)
Abstract
Protocol is mainly inspired from: WormBook Methods http://www.wormbook.org/chapters/www_strainmaintain/strainmaintain.html.
We use this protocol for our foraging experiments with the worm Caenorhabditis elegans, using different strains of bacteria.
This protocol describes how to produce the buffer we use to wash our bacteria after growing them in LB. The buffer has a similar composition as our Foraging Medium, but contains no cholesterol. It contains antibiotics at bacteriostatic concentrations (for our bacterial strains), in order to prevent bacteria from multiplying after they have been washed.
Materials
Agar powder: AgarMerck MilliporeSigma (Sigma-Aldrich)Catalog #A1296-10KG
Cholesterol: Cholesterol powderMerck MilliporeSigma (Sigma-Aldrich)Catalog #C3045-5G
Absolute ethanol: Ethanol absolute ≥99.8% AnalaR NORMAPUR® ACS Reag. Ph. Eur. Analytical ReagentVWR International (Avantor)Catalog #20821.310-1L
Sodium chloride (NaCl): Sodium chlorideMerck MilliporeSigma (Sigma-Aldrich)Catalog #S5886-1KG
Peptone: Peptone (Bacto)Becton Dickinson (BD)Catalog #211677-500G
Chloramphenicol: ChloramphenicolMerck MilliporeSigma (Sigma-Aldrich)Catalog #CO378-25G
Novobiocin: NovobiocinMerck MilliporeSigma (Sigma-Aldrich)Catalog #N1628-5G
Tissue Culture Dishes:
100x20mm: Falcon® 100 mm TC-treated Cell Culture DishCorningCatalog #353003
60x15mm: Petri Dishes 60x15mm with vent greiner bio-oneCatalog #628102
35x10mm: Plastic petri dish 35 x 10 mm styleFalconCatalog #353001
Troubleshooting
In order to perform this protocol, you will need the following solutions:
- pH=6 phosphate buffer (as prepared in: https://www.protocols.io/view/preparation-of-0-5l-of-phosphate-buffer-ph-6-0-n2bvj8r7bgk5/v1)
- 1 M magnesium sulfate (as prepared in: https://www.protocols.io/view/preparation-of-1m-magnesium-sulfate-solution-mgso4-ca4rsgv6)
- 1 M calcium chloride (as prepared in: https://www.protocols.io/view/preparation-of-1m-calcium-chloride-solution-cacl2-b8parvie)
- 10 mg/mL chloramphenicol in absolute ethanol (stored in freezer)
- 50 mg/mL novobiocin in milliQ water (filter-sterilized and then stored in freezer, in 1.8 mL aliquots to avoid defreezing-refreezing the whole stock)
Add 2.32 g ±0.02 of sodium chloride (NaCl).
Add 780 mL of milliQ water.
Add a clean magnet (for stirring) and autoclave.
Put the bottle on a stirrer, and wait until it cools down to around 60°C. At this temperature, the bottle should feel very hot to the touch, but one can hold it for a while without feeling too uncomfortable. The agar should still be liquid.
While the mix is being stirred, do the following steps in that order, dispensing the reagents right above the surface (to avoid bubbles) with a sterile pipette:
Add 20 mL of phosphate buffer as prepared in https://www.protocols.io/view/preparation-of-0-5l-of-phosphate-buffer-ph-6-0-n2bvj8r7bgk5/v1. This should be added first to prevent any unnecessary precipitation of the next reagents. Wait for ~20 seconds after adding the buffer to give it time to mix well and stabilize the pH.
Add 0.8 mL of 1M magnesium sulfate (MgSO4) solution as prepared in https://www.protocols.io/view/preparation-of-1m-magnesium-sulfate-solution-mgso4-ca4rsgv6.
Add 0.8 mL of 1M calcium chloride (CaCl2) solution as prepared in https://www.protocols.io/view/preparation-of-1m-calcium-chloride-solution-cacl2-b8parvie.
This step should make the medium a bit cloudier, but remain translucent.
Add 0.8 mL of chloramphenicol (10 mg/mL in absolute ethanol, stored in freezer).
Add 1.6 mL of novobiocin (50 mg/mL in milliQ water, stored in freezer).
We store our buffer at room temperature, usually for 2-3 weeks without problem. After this time, it is very common that salts will start precipitating in the bottom of the bottle, but we sometimes use the buffer for a few more weeks if it shows no crystals.