Mar 20, 2024

Populating NCBI template for submissions using BioNumerics V.3

DOI
https://dx.doi.org/10.17504/protocols.io.36wgq3ejylk5/v3
Populating NCBI template for submissions using BioNumerics
  • 1US Food and Drug Administration;
  • 2New York State Department of Agriculture & Markets
Maria Balkey
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DOI: https://dx.doi.org/10.17504/protocols.io.36wgq3ejylk5/v3
Protocol Citation: Ruth Timme, Maria Balkey, Julie Haendiges, Brian Sauders, Tina Lusk Pfefer 2024. Populating NCBI template for submissions using BioNumerics . protocols.io https://dx.doi.org/10.17504/protocols.io.36wgq3ejylk5/v3Version created by Maria Balkey
License: This is an open access  protocol  distributed under the terms of the  Creative Commons Attribution License,  which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited
Protocol status: Working
We use this protocol and it's working
Created: March 20, 2024
Last Modified: March 20, 2024
Protocol  Integer ID: 97005
Keywords: NCBI submission, BioNumerics, biosample, SRA, metadata, bioproject, bionumerics for submission, submission of genometrakr, environmental isolates to ncbi, ncbi template for submission, genometrakr submission, ncbi-update submission sheet, using bionumeric, populating ncbi template, collecting isolate metadata, genometrakr, bionumeric, records to ncbi, genometrakr network management, isolate metadata, familiar with the mandatory metadata field, ncbi, sequencing record, environmental isolate, mandatory metadata field, sequencing, standardized procedure,
Abstract
PURPOSE: to define the standard operating procedure for collecting isolate metadata using BioNumerics for submission of food/environmental isolates to NCBI.

SCOPE: to provide a standardized procedure to collect isolate metadata using BioNumerics for submission of food/environmental isolates to NCBI.

RESPONSIBILITIES- SOP Responsible Officials: Ruth Timme, Maria Balkey

The GenomeTrakr Network Management will be responsible to monitor GenomeTrakr submissions processed through Bionumerics and ensure that all GT labs are familiar with the mandatory metadata fields required for submission of GenomeTrakr sequencing records to NCBI.

V3: Dropdown menus from controlled vocabulary added to the ncbi_update submission sheet
New Version for this protocol
Visit the new version of this protocol by clicking the following link: https://www.protocols.io/view/populating-ncbi-template-for-submissions-using-bio-3byl4qn4ovo5/v1