Pool 1 genes | Size (bp) | Volume for each primer (µL) | |
AMA-1 | 1720 | 5 | |
CSP | 1712 | 5 | |
CyRPA | 1723 | 5 | |
MSP8 | 1704 | 5 | |
P41 | 1700 | 5 | |
s12 | 1743 | 5 | |
s28 | 1708 | 5 | |
TRAMP | 1747 | 5 | |
TRAP | 1731 | 5 | |
Water | -- | 10 | |
Total | -- | 100 |
Pool 2 genes | Size (bp) | Volume for each primer (µL) | |
DBP | 4300 | 5 | |
MSP9 | 4333 | 5 | |
MSP1_1 | 4338 | 5 | |
RBP1a_1 | 4318 | 5 | |
RBP2a_1 | 4314 | 5 | |
RBP2b_1 | 4357 | 5 | |
RON2_1 | 4350 | 5 | |
Water | -- | 30 | |
Total | -- | 100 |
Pool 3 genes | Size (bp) | Volume for each primer (µL) | |
MSP1_2 | 4381 | 5 | |
RBP1a_2 | 4387 | 5 | |
RBP2a_2 | 4326 | 5 | |
RBP2b_2 | 4303 | 5 | |
RON_2 | 4310 | 5 | |
Water | -- | 50 | |
Total | -- | 100 |
PCR components | 1x volume (µL) | |
2x KAPA HotStart HiFi RM | 6.25 | |
0.5µM primer pool (s) | 1.5 | |
Nuclease-free water | 3.75 | |
Template DNA (1-100ng) | 1 | |
Total | 12.5 |
Step | Temperature (C) | Time | Number of cycle | |
Initial denaturation | 95 | 3 mins. | 1 | |
Denaturation | 98 | 20 secs. | 35 | |
Annealing | 63 | 15 secs. | ||
Extension | 72 | 4 mins. | ||
Final extension | 72 | 5 mins. | 1 | |
Hold | 4 | ∞ | 1 |
Step | Temperature (C) | Time | Number of cycle | |
Initial denaturation | 95 | 3 mins. | 1 | |
Denaturation | 98 | 20 secs. | 35 | |
Annealing | 63 | 15 secs. | ||
Extension | 72 | 6 mins, 30 seconds | ||
Final extension | 72 | 10 mins. | 1 | |
Hold | 4 | ∞ | 1 |
PCR components | 1x volume (µl) | |
LongAmp mastermix | 12.5 | |
PCR Barcode (Nanopore) | 1 | |
Purified DNA | 5-10 | |
Nuclease-free water | 1.5-6.5 | |
Total | 25 |
Step | Temperature (C) | Time | Number of cycles | |
Initial denaturation | 95 | 3 mins. | 1 | |
Denaturation | 95 | 15 secs. | 18 | |
Annealing | 62 | 15 secs. | ||
Extension | 65 | 5 mins., 30 secs. | ||
Final extension | 72 | 10 mins. | 1 | |
Hold | 4 | ∞ | 1 |