Item | Supplier | Part Number | Notes | |
Ligation Sequencing Kit V14 | Oxford Nanopore Technologies | SQK-LSK114 | The Long Fragment Buffer (LFB) will NOT be used because it selects for fragments that are 3kb and longer. | |
NEBNext Ultra II End repair/dA-tailing Module | New England BioLabs | E7546 | ||
NEBNext Quick Ligation Module | New England BioLabs | E6056 | NEBNext Quick Ligation Reaction Buffer will NOT be used. | |
AMPure® XP Reagent | Beckman Coulter | A63880 (5 mL) A63881 (60 mL) | ||
Nuclease-Free Water | Sigma-Aldrich | W4502 | Or equivalent nuclease-free water. | |
Ethyl Alcohol, Pure | Sigma-Aldrich | 459844 | Or equivalent 100% non-denatured ethanol. |
A | B | C | D | |
Thermomixer | Various Suppliers | Varies | Compatible with 1.5 mL tubes. | |
Microcentrifuge | Various Suppliers | Varies | Compatible with 1.5 mL tubes. | |
Single Channel Pipettes: P2, P20, P200, P1000 | Various Suppliers | Varies | ||
Vortex-Genie 2 | Scientific Industries | SI-0236 | Or an equivalent vortex mixer. | |
6-Tube Magnetic Separation Rack | New England Biolabs | S1506S | Or an equivalent magnetic rack for 1.5 mL tubes. | |
Qubit Flex Fluorometer | Thermo Fisher Scientific | Q33327 | Or an equivalent fluorometer. |
A | B | C | D | |
Pipette Tips TR LTS 10 μL, 20 μL, 200 μL, 1,000 μL | Rainin | 17014961 17014963 17014967 | Or appropriate sterile, DNA low-binding, and filtered pipette tips. We do not recommend using wide bore tips. | |
DNA LoBind® Tubes, 1.5 mL, Snap Cap | Eppendorf | 022431021 | Or equivalent DNA low-binding, nuclease-free 1.5 mL tubes. | |
Qubit dsDNA HS (High Sensitivity) Assay Kit | Thermo Fisher Scientific | Q33230 (100 assays) Q33231 (500 assays) | Or equivalent fluorescent DNA dye based quantification kit. | |
Ice bucket | Various Suppliers | Varies |
Item | Location | Handling and Storage | |
DNA Control Sample (DCS) | Ligation Sequencing Kit V14 (-20°C) | Thaw on ice and mix by pipetting. | |
Ligation Adapter (LA) | Ligation Sequencing Kit V14 (-20°C) | Thaw on ice and mix by pipetting, do NOT vortex. | |
Ligation Buffer (LNB) | Ligation Sequencing Kit V14 (-20°C) | Due to viscosity, vortexing this buffer is ineffective. Spin down and mix by pipetting. | |
Short Fragment Buffer (SFB) | Ligation Sequencing Kit V14 (-20°C) | Thaw on ice and mix well by vortexing. | |
Elution Buffer (EB) | Ligation Sequencing Kit V14 (-20°C) | Thaw on ice and mix well by vortexing. | |
Ultra II End-Prep Enzyme Mix | NEBNext Ultra II End repair/dA-tailing Module (-20°C) | Thaw on ice and mix by pipetting, do NOT vortex. | |
Ultra II End-Prep Reaction Buffer | NEBNext Ultra II End repair/dA-tailing Module (-20°C) | Thaw on ice and mix well by vortexing. Make sure there is no precipitate. | |
Ultra II End Prep Enzyme Mix | NEBNext Quick Ligation Module (-20°C) | Thaw on ice and mix by pipetting, do NOT vortex. | |
AMPure XP Beads (AXP) | 4°C | Equilibrate to room temperature. |
Item | Volume (μL) | |
DNA CS | 1 | |
cDNA sample | 49 | |
Ultra II End-prep Reaction Buffer | 7 | |
Ultra II End-prep Enzyme Mix | 3 |
Item | Volume (μL) | |
cDNA sample (from the previous step) | 60 | |
Ligation Adapter (LA) | 5 | |
Ligation Buffer (LNB) | 25 | |
NEBNext Quick T4 DNA Ligase | 10 |