Jul 12, 2023
Version 1
Mitochondrial staining of NK cells by flow cytometry V.1
- Philippa Kennedy1
- 1University of Minnesota
External link: https://doi.org/10.1126/sciadv.adn1849
Protocol Citation: Philippa Kennedy 2023. Mitochondrial staining of NK cells by flow cytometry. protocols.io https://dx.doi.org/10.17504/protocols.io.e6nvw9222gmk/v1
Manuscript citation:
Kennedy PR, Arvindam US, Phung SK, Ettestad B, Feng X, Li Y, Kile QM, Hinderlie P, Khaw M, Huang R, Kaufman M, Puchalska P, Russell A, Butler J, Abbott L, McClure P, Luo X, Lu QT, Blazar BR, Crawford PA, Lim J, Miller JS, Felices M Metabolic programs drive function of therapeutic NK cells in hypoxic tumor environments. Science Advances 10(44). doi: 10.1126/sciadv.adn1849
License: This is an open access protocol distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited
Protocol status: Working
We use this protocol and it's working
Created: April 23, 2020
Last Modified: July 12, 2023
Protocol Integer ID: 36062
Keywords: mitochondrial membrane potential assay kit, mitochondrial staining of nk cell, mitosox red mitochondrial superoxide indicator, mitochondrial staining, mitochondrial membrane, analysis of nk cell, mitochondrial mass by microscopy, mitochondria, quantifying mitochondrial mass, quick measure of mitochondrial mass, mitochondrial swelling, health of the mitochondria, nk cell, mitochondrial mass, reactive oxygen species within the cell, flow cytometry mitotracker green, contaminating cell, cell signaling technology cat, flow cytometry, much reactive oxygen species, membrane charge uncoupler, reactive oxygen species, oxidative stress, live cell, potential assay kit, fluorescent indication of the charge, cell, mitsox indicator, face of oxidative stress, hydrogen peroxide, thermo fisher scientific cat, fluorescent indication
Disclaimer
This protocol details how we follow the manufacturer's instructions for staining of mitochondrial features by flow cytometry.
Abstract
Mitotracker Green (Thermo Fisher Scientific, cat. M7514) stains mitochondrial membranes, so gives a quick measure of mitochondrial mass per cell. However, it is not always as sensitive as quantifying mitochondrial mass by microscopy and staining intensity can be affected by mitochondrial swelling or reactive oxygen species.
Mitochondrial membrane potential assay kit (Cell Signaling Technology cat. 13296S) gives a fluorescent indication of the charge across mitochondrial membranes and thus the health of the mitochondria. A membrane charge uncoupler is included in the kit that depolarizes mitochondrial membranes and is thus a useful negative control.
MitoSOX Red Mitochondrial Superoxide Indicator (Thermo Fisher Scientific cat. M36008) detects reactive oxygen species within the cell. To see how much reactive oxygen species are generated in the face of oxidative stress, the cells can be pre-incubated with hydrogen peroxide and then stained with MitSOX indicator.
TO-PRO-3 (Thermo Fisher Scientific, cat. T3605) is a non-membrane permeable DNA-dye to discriminate live cells. Staining for CD56+ CD3- cells allows analysis of NK cells, not any contaminating cells.
These stains are performed on live cells and analyzed without fixation.
Materials
Mitotracker Green (Thermo Fisher Scientific, cat. M7514)
Mitochondrial membrane potential assay kit (Cell Signaling Technology cat. 13296S) - contains TMRE and CCCP
MitoSOX Red Mitochondrial Superoxide Indicator (Thermo Fisher Scientific cat. M36008)
TO-PRO-3 (Thermo Fisher Scientific, cat. T3605)
anti-CD3-Bv785 (clone OKT3, Biolegend, cat. 317330, RRID:AB_2563507)
anti-CD56-PE-Cy7 (clone HCD56 cat. 318318, Biolegend, RRID:AB_604107)
RPMI (Gibco, cat. 2240-089)
Hanks' balanced salt solution (Gibco, 14025-092)
Human AB serum (Valley biomedical, cat. HP-1022HI)
UltraPure 0.5M EDTA, pH8 (Life Technologies, cat. 15575020)
PBS (Corning, 21-040-CV)
DMSO (Cat. BP231-100, Fisher Bioreagents)
Hydrogen peroxide solution (Sigma-Aldrich, cat. 216763-100ML)
Troubleshooting
Mitotracker and TMRM combined staining (keep on ice)
Resuspend 1x10^6 cells in 850 μL RPMI medium (no serum) for all tubes. Keep tubes on ice
Before diluting reagents, set up the CCCP negative controls:
- Add 1 μL CCCP to tubes containing 1x10^6 cells in 850 μL RPMI
- Incubate at 37°C (no CO2) for 20 min.
Prepare staining reagents and keep on ice:
TMRM:
- Stock (can be freeze-thawed): prepare by adding 55 μL DMSO to lyophilized TMRM
- Working dilution: 2 μL stock into 1 mL RPMI
Mitotracker Green:
- Stock (can be freeze-thawed): Add 74.48 μL DMSO to tube contents to obtain 1 mM Mitotracker Green.
- Working dilution 100 nM in RPMI (i.e. 1:100 to get 10 μM stock; then 1:100 to get 100 nM solution)
After CCCP incubation, add TMRM and Mitotracker Green to ALL tubes (including CCCP controls):
- 100 μL TMRM
- 50 μL Mitotracker Green (from 100nM working solution)
Incubate at 37°C (no CO2) for 20 min.
Wash with flow buffer (1% human AB serum, 0.5 mM EDTA in PBS).
- If staining in a 96 well plate, wash 3 times with 200 μl flow buffer.
- If staining in a tube, wash once with 3 mL flow buffer.
Keep on ice until surface staining
(Optional) Stress mitochondria with hydrogen peroxide
Prior to harvesting cells for mitoSOX staining, they can be stressed with hydrogen peroxide:
- Resuspend 500,000 cells/condition in fresh media.
- Add a titration of H2O2 e.g. 0 μM, 10 μM, 50 μM, 100 μM.
- Incubate for 1h at 37ºC.
Proceed to staining.
MitoSOX staining (keep on ice)
Spin down 500,000 cells per tube and remove supernatant (400g for 5 min)
Dilute reagents:
- Stock (can be freeze-thawed if necessary): Dissolve MitoSOX reagent in 13 μL DMSO to make 5 mM solution
- Dilute 5mM solution 1:1000 in Hanks' balanced salt solution for 5 μM solution
- For DMSO control, dilute DMSO 1:1000 in Hanks' balanced salt solution.
Add 200 μL working solution to each tube
Incubate cells at 37°C for 15 min.
Wash cells with flow buffer
- If staining in a 96 well plate, wash 3 times with 200 μl flow buffer.
- If staining in a tube, wash once with 3mL flow buffer.
Stain for live NK cells
Prepare stain mix with anti-CD3 and anti-CD56
- anti-CD3 BV785 – 5 μL/sample
- anti-CD56 PE-Cy7 – 5 μL/sample
- Flow buffer – 90 μL/sample
After spinning down cells and completing washes (see above), add 100 μL stain/tube.
Incubate at 4°C for 15 min.
Wash twice with flow buffer
Dilute TO-PRO-3 dye (1:10,000) in flow buffer.
Add 300 μL flow buffer per tube
Add 200 μL diluted TO-PRO-3 per tube
Run immediately on flow cytometer (LSRII, BD Biosciences)
Live (TO-PRO-3-negative) single NK cells (CD56+ CD3-) cells can then be quantified for the amounts of mitochondrial stains relative to negative controls (DMSO and CCCP).