Mar 29, 2025
Microscopy imaging of SUM159PT cells expressing fluorescent endosomal proteins
- Harper JW1,
- Miguel A. Gonzalez-Lozano1
- 1harvard university
Protocol Citation: Harper JW, Miguel A. Gonzalez-Lozano 2025. Microscopy imaging of SUM159PT cells expressing fluorescent endosomal proteins . protocols.io https://dx.doi.org/10.17504/protocols.io.6qpvr8173lmk/v1
License: This is an open access protocol distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited
Protocol status: Working
We use this protocol and it's working
Created: October 19, 2024
Last Modified: March 29, 2025
Protocol Integer ID: 110334
Keywords: ASAPCRN, microscopy imaging of sum159pt cell, fluorescent endosomal protein, expressing fluorescent endosomal protein, imaging of various organelle, sum159pt cell, microscopy imaging, clcn3 in these cell, various organelle, microscopy, expressing fluorescent marker, fluorescent markers of interest, expression of tmem9, cell, tmem9, imaging, protein
Funders Acknowledgements:
aligning science across parkinson's
Grant ID: 024268
aligning science across parkinson's
Grant ID: 000292
Abstract
SUM159PT cells allow for imaging of various organelles expressing fluorescent markers of interest. We describe methods for examining expression of TMEM9-GFP and mCherry-CLCN3 in these cells.
Materials
pHAGE-mCherry-CLCN3(Addgene, 225514)
pHAGE-TMEM9-EGFP (Addgene, 225515)
SUM159PT cells (RRID:CVCL_5423)
anti-GFP (Thermo Scientific, a10262)
anti-mCherry (Thermo Scientific, M11217)
anti-EEA1 (Cell Signaling Technology, C45B10)
anti-LAMP1 (Cell Signaling Technology, D2D11)
Troubleshooting
Expression of desired proteins in SUM159PT cells
Lentiviral vectors for pHAGE-mCherry-CLCN3 or pHAGE-TMEM9-EGFP were packaged in HEK293T cells (ATCC #CRL-3216; RRID:CVCL_0045) as described (https://dx.doi.org/10.17504/protocols.io.6qpvr3en3vmk/v1). Cells were co-transfected at 60% confluency with pPAX2, pMD2 and the target vector in a 4:2:1 ratio using polyethylenimine.
SUM159PT cells (a gift from Tobias Walter (Memorial Sloan Kettering); RRID:CVCL_5423) are cultured in 6-well culture dishes (300 000 cells/well) with DMEM/F12 supplemented with GlutaMAX, 5% fetal bovine serum, 1μg/ml hydrocortisone and 5μg/ml insulin.
One day later, lentiviral supernatants from the HEK293 cells are used to infect SUM159PT. Alternatively, SUM159PT cells are transfected with 500ng of plasmids using FuGENE and Optimem transfection reagent and incubated at 37°C and 5% CO2.
One day after transfection, cells are selected with puromycin (5 µg/mL) and plated into 24-well glass
bottom culture dishes for imaging (50 000-100 000 cells/well).
Immunostaining
For immunofluorescence staining, SUM159PT cells are fixed with 4% paraformaldehyde
in PBS for 15min at room temperature.
Cells are permeabilized with 0.5% Triton X-100 in PBS for 10 min at room temperature.
Cells are blocked with 3 % BSA in PBS with 0.1% Triton X-100 for 1h at room temperature.
Incubate the cells with primary antibodies (anti-GFP, anti-mCherry, anti-LAMP1, or anti-EEA1) (1:200 dilution) in 3% BSA in PBS with 0.1% Triton X-100 for 3h at 4°C.
Remove primary antibody and wash 5 times with 1 mL of PBS.
Incubate cells with Alexa Fluor secondary antibodies (1:400) for 1h at 4°C in 3% BSA in PBS with 0.1% Triton X-100.
Stain nuclei with Hoechst33342 (1:10000) for 5 min.
Wash cells with PBS and maintained in PBS at 4°C until microscopy analysis.
Imaging
Imaging steps will depend on the specific microscopes and fluorophores used.
Use Fiji/ImageJ software to display z-series as maximum intensity projections.
For colocalization analysis, calculate Mander’s correlation coefficients between two channels with BIOP JACoP plugin in Fiji.