1. Use NIS-Elements (Nikon) software for quantification.
2. View aorta images under a microscope simultaneously while the images are used as templates for noting lesions.
3. Quantification is verified by a second observer who is blind to study groups.
NOTES: After verification, aortas should be unpinned, put into properly labeled tubes with 4% PFA or 10% neutrally buffered formalin and stored at room temperature.
1. Go to the "Image" menu ➝ "Rotate", rotate the image.
2. Go to the "Edit" menu ➝ "Insert Text", insert study name and mouse ID.
3. Go to “File” ➝ “Save as”, save with a new file name. For example, save “#1.nd2" as “#1 measured. nd2".
1. Go to the "Calibration" menu ➝ "Quick calibration" ➝ choose one of them, and draw line of known length on the ruler.
Quick_Calibration.jpg 2. Name your calibration and enter real size and unit of line.
1. Select the correct calibration for each image opened. There are two ways to calibrate the images.
(1) choose the calibration at the place (red circle) showed in the picture
Calibrate_Images.jpg . (2) right click the place (red circle) showing in the image below. Then, choose “Calibrate using objective” →choose your calibration.
Calibrate_using_Objective.jpg 2. Click “measure” menu ➝ “Manual measurement” ➝ “length” ➝ “Annotation and Measurement” window pops out.
3. Choose “Simple line” (∖) icon. Use the line to measure 1 or 3 mm on the ruler (Figure 3 in the attachment).
4. Select the arrow (↖) button. For example, to define the ascending and arch region, drag the line so one end touches the root of the left subclavian artery. Use the line as a marker to separate the arch portion from the descending thoracic portion when measuring (Figure 3 in the attachment).
5. Select the polygon button on the Measurement Toolbar and trace the intimal area of the arch region.
6. Use the polygon function to trace the lesions in arch region on the aorta image, and check the aorta through the microscope.
7. Measure from the end of the arch region (see Step 4) to 1 mm above the celiac artery, and outline this section of the aorta for the descending thoracic region.
8. Look at the aorta through the microscope, and trace lesions in the descending thoracic aorta on the image.
9. Outline the abdominal region. From the end of thoracic region (1 mm above the celiac artery) to the iliac bifurcation.
10. Trace lesions in the abdominal region and look at the aorta through the microscope.
11. Save your measured image.