Aug 28, 2025

Public workspace Mayo Schafer TDA - Aged Brain Spatial Profiling Collection V.2

  • Chase Carver1,
  • Marissa Schafer1
  • 1Mayo Clinic
  • Cellular Senescence Network (SenNet) Method Development Community
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Collection CitationChase Carver, Marissa Schafer 2025. Mayo Schafer TDA - Aged Brain Spatial Profiling Collection . protocols.io https://dx.doi.org/10.17504/protocols.io.4r3l21qzjg1y/v2Version created by Chase Carver
License: This is an open access collection distributed under the terms of the Creative Commons Attribution License,  which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited
Protocol status: Working
Collection for Spatial Profiling of FFPE mouse brain tissue
Created: August 28, 2025
Last Modified: August 28, 2025
Collection Integer ID: 225670
Keywords: aging, microglia, white matter, neuroinflammation, senescence, microglia in aged mouse brain white matter, aged brain spatial profiling collection, aged mouse brain white matter, associated microglia, microglia, mice brain tissue, digital spatial profiling cosmx, protocols for brain tissue, processing immunofluorescence imaging geomx, case selection for mice brain tissue, spatial molecular imaging, brain tissue, protocol methodology doi for brain imaging, brain imaging, senolytic targeting of senescent, senolytic targeting, spatial
Funders Acknowledgements:
NIH Cellular Senescence Network
Grant ID: UG3 CA275669
National Institute on Aging
Grant ID: R00 AG05879
National Institute on Aging
Grant ID: R01 AG071686
Abstract
This collection contains to the protocol methodology DOI for brain imaging produced in Carver et al., "Spatial mapping and senolytic targeting of senescent and disease-associated microglia in aged mouse brain white matter".

The protocols for brain tissue include:

Case selection for mice
Brain tissue processing
Immunofluorescence imaging
GeoMx digital spatial profiling
CosMx spatial molecular imaging
Troubleshooting
Files
Protocol
Name
Case Selection
Version 1
, Mayo Clinic
Chase CarverMayo Clinic
Protocol
Name
Carver et al, Aged Brain Spatial Profiling - Tissue Processing
Version 1
, Mayo Clinic
Chase CarverMayo Clinic
Protocol
Name
Carver et al., Aged Brain Spatial Profiling - Immunofluorescence Imaging
Version 1
, Mayo Clinic
Chase CarverMayo Clinic
Protocol
Name
Carver et al., Aged Brain Spatial Profiling - GeoMx
Version 1
, Mayo Clinic
Chase CarverMayo Clinic
Protocol
Name
Carver et al, Aged Brain Spatial Profiling - CosMx
Version 1
, Mayo Clinic
Chase CarverMayo Clinic