Aug 09, 2023

iNDI Maintenance protocol of iPSCs Version 1 

DOI
https://dx.doi.org/10.17504/protocols.io.q26g7py6kgwz/v1
iNDI Maintenance protocol of iPSCs Version 1
  • 1National Institutes of Health, NIH Center for Alzheimer's and Related Dementias (CARD)
  • NIH Center for Alzheimer's and Related Dementias
Erika Lara Flores
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DOI: https://dx.doi.org/10.17504/protocols.io.q26g7py6kgwz/v1
External link: https://www.jax.org/jax-mice-and-services/ipsc, https://www.jax.org/jax-mice-and-services/ipsc/cells-collection
Protocol Citation: michael.ward , Erika Lara Flores, Mark Cookson 2023. iNDI Maintenance protocol of iPSCs Version 1 . protocols.io https://dx.doi.org/10.17504/protocols.io.q26g7py6kgwz/v1
License: This is an open access protocol distributed under the terms of the Creative Commons Attribution License,  which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited
Protocol status: Working
We use this protocol and it's working
Created: August 09, 2023
Last Modified: August 09, 2023
Protocol Integer ID: 86179
Keywords: iNDI, iPSC, neurodegeneration, genetic engineering, Jackson Laboratory, freezing, maintenance, maintenance protocol of ipscs version, ipsc maintenance protocol, ipsc freezing ipsc, passaging ipsc freezing ipsc, thawing ipsc splitting, ipscs version, ipsc, plates vitronectin procedure, ipsc splitting, coating plate, matrigel procedure, maintenance protocol, vitronectin procedure
Abstract
IPSC maintenance protocol
  • Matrigel procedure for coating plates
  • Vitronectin procedure for coating plates
  • Thawing iPSC
  • Splitting and Passaging iPSC
  • Freezing iPSC
Materials
Matrigel hESC-qualified (Corning Cat# 354277)CorningCatalog #354277
Vitronectin (VTN-N) Recombinant Human Protein Truncated Thermo ScientificCatalog # A31804
Essential 8™ Medium Gibco - Thermo Fisher ScientificCatalog #A1517001
• Chroman I MedChemExpressCatalog #HY-15392
• Phosphate Buffered Saline (1X) without Calcium or Magnesium LonzaCatalog # 17-516F
0.5 mM EDTA Gibco - Thermo Fisher ScientificCatalog # AM9260G
Accutase Gibco - Thermo Fisher ScientificCatalog # A1110501
Dimethylsulfoxide (DMSO)CorningCatalog #25-950-CQC
Knockout™ Serum Replacement Gibco - Thermo Fisher ScientificCatalog #10828028
KnockOut™ DMEM/F-12 Gibco - Thermo Fisher ScientificCatalog #12660012


Matrigel Coating
1h 30m
Aliquot concentrated Matrigel:
  • Gradually thaw a 5ml bottle of Matrigel on ice in a Styrofoam container
  • Pre-chill labeled Eppendorf tubes by placing in a cool rack on ice.
  • Before pipetting concentrated Matrigel into pre-chilled tubes, chill a 1 ml pipet tip by pipetting ice-cold KnockOut™ DMEM/F-12 up and down several times, then immediately use the tip to aliquot Matrigel.
  • Prepare aliquots of 500 µL of concentrated Matrigel and freeze down at-80 °C

Note
Matrigel concentrated can polymerize rapidly at room temperature, so it’s very important when aliquoting or preparing coating solution do on ice.



Coating plates with Matrigel solution:
  • Reconstitute a 500 µL aliquot of Matrigel in 50 mL of cold KnockOut™ DMEM/F-12, pipet 500 µL cold media into the aliquot of Matrigel tube and pipet up and down several times, then transfer what has thawed to the tube containing 50 mL of cold KnockOut™ DMEM/F-12, repeat until the frozen aliquot of Matrigel has been completely transferred to the 50 ml of cold media. Mix inverting several times.

Note
Matrigel solution can be store at 4°C until it finishes.
  • Add half of the normal culture volume of Matrigel solution to the culture surface (i.e., 1 ml per well of a 6-well plate).
  • Gently rock plate to spread the Matrigel solution evenly across the plate.
  • Place in 37 °C incubator for 00:30:00 to 01:00:00 before use it.

Note
For KOLF2.1 iPSC you can get better results from Overnight coating

  • Aspirate Matrigel and add culture medium (E8).

There is another option for coating plates besides Matrigel. Vitronectin is a recombinant human protein that provides a defined surface for feeder-free culture of iPSC. When used with E8 medium, vitronectin has been proven to maintain pluripotency and normal growth characteristics in multiple iPSC lines.






1h 30m
Vitronectin Coating
30m
Aliquot concentrated Vitronectin 0.5 mg/ ml0.5 mg/mL
  • Thaw a vial of Vitronectin on ice in a Styrofoam container.
  • Prepare aliquots of 60 µL of concentrated Vitronectin and freeze down at -80 °C


Coating plates with Vitronectin solution 5 Mass Percent
  • Reconstitute a 60 µL aliquot of Vitronectin into a 15 ml conical tube containing 6 mL of PBS, gently resuspend by pipetting up and down, do not vortex.
  • Add half of the normal culture volume of Vitronectin solution to the culture surface (i.e. 1 ml per well of a 6-well plate).
  • Gently rock plate to spread the Vitronectin solution evenly across the plate.
  • Place in 37 °C incubator for Overnight before use it.
  • Aspirate Vitronectin and add culture medium (E8).






Thawing iPSC
5m
Remove iPSC stock cryovial from liquid nitrogen and thaw in 37 °C bead bath. Thaw quickly by gently swirling until a small piece of frozen material remains. Spray the vial with 70% ethanol before transferring to a biological safety cabinet.
Note
Since DMSO is toxic to cells at room temperature, perform the following steps in a time-efficient manner to obtain optimal cell viability.



Gently add the thawed cell suspension dropwise to a conical tube containing 10 mL culture medium or PBS, rinse cryovial with 1ml of medium and add the rinse to the tube, gently mix cells by swirling.


Centrifuge tube 00:05:00 at 200 - 300 x g at Room temperature


5m
Aspirate the supernatant and gently resuspend cells in culture medium (E8) supplemented with 50 nanomolar (nM) Chroman I and transfer to Matrigel or Vitronectin-coated plates.

Note
After thawing the cells is recommended to maintain high cell density to maximize cell viability. The table below suggests some number of cells and vessel to use.

Number of cells in cryovial Vessel
3 x 106 cells 100 mm dish
0.5 x 106 to 1 x 106 cells a well of 6 well plate
0.2 x 106 to 0.4 x 106 a well of 12 well plate
0.08 x 106 to 0.15 x 106 a well of 24 well plate


Gently rock plate to evenly distribute cells.

Return plate to 37 °C incubator.


Next day replace the media with fresh E8 medium (2 mL /well of a 6-well plate).


When the well is 80% confluent pass to expand stock.

Splitting/Passaging iPSC
24m
EDTA
Aspirate culture medium and wash with PBS 1X.

Aspirate PBS and add half of culture volume (1ml/well of a 6-well plate) of EDTA 0.5 millimolar (mM) in PBS.

Note
I have been using Cell Dissociation Buffer, enzyme-free, PBSThermo FisherCatalog #13151014 as well and it works the same as EDTA.



Incubate for 00:03:00 at 37 °C or 00:08:00 at Room temperature

Note
The time can vary by cell line and density (the optimal density is 70-90%)


11m
Aspirate EDTA solution, the cells colonies should remain attached so be careful not to disturb them.


Add 1 mL of culture medium supplemented with 50 nanomolar (nM) Chroman I to cells to dissociate by pipetting two or three times.


Typically splitting ratios for 6 well plates are between 1:6 and 1:12, so, add the desire volume of culture medium to the cells and discard any excess of cells or re-plate into a new Matrigel or Vitronectin-coated well.


Accutase

Aspirate culture medium and wash with PBS 1X.

Aspirate PBS and add half of culture volume of Accutase.
Transfer to 37 °C incubator for 00:08:00

Note
The time can vary by cell line and density (the optimal density is 70-90%) and the goal to use accutase is singularize as single cells.

8m
Meanwhile aspirate Matrigel/Vitronectin from plates and add culture medium E8 supplemented with 50 nanomolar (nM) Chroman I.

When Incubation is ready, tilt the plate and pipet the accutase solution two to three times up and down the culture surface to break the colonies.

Quench the Accutase adding half of the culture volume of PBS.


Transfer to a new conical tube and rinse with more PBS the culture surface, combine with the cell solution in the tube.


Centrifuge 00:05:00 at 200 - 300 x g at Room temperature


5m
Aspirate supernatant.


Note
Remains of Accutase could interfere with the cell viability after re-plating, make sure you aspirate everything.



Resuspend the cell pellet in culture medium E8 supplemented with 50 nanomolar (nM) Chroman I.



Count cells and plate cells the desire amount into a Matrigel-coated plates.


Gently rock plate to evenly distribute cells.
Return plate to 37 °C incubator.


The next day replace the medium with fresh E8 (2ml/well of a 6-well plate)

When the well is 80% confluent pass to achieve an assay or to expand stock.


Note
KOLF2.1 iPSC does not behave well when is more than 80-90%, most of the cells will die and it will be very difficult to get them back.



Freezing iPSC
Prepare freezing medium as combining Knockout™ Serum Replacement with 10% DMSO.
Leftovers of EDTA or Accutase dissociation procedure could be cryopreserved by centrifuging as in step 14.8 and resuspending the cell pellet with freezing medium.


When freezing cells from a well/plate, prepare the cells as for EDTA split.



Aspirate EDTA and gently dissociate cells with freezing medium.


Transfer 1 mL of cell suspension to a 1 mL cryovial and freeze in a CoolCell freezing container at -80 °C
Overnight

Next day transfer the cryovials to liquid nitrogen for long term storage.