This protocol describes immunohistochemical procedures applied to wholemount major pelvic ganglia (MPG) for the visualization of myelinated axons filled with cholera toxin subunit B (CTB) and/or neurons transfected with adeno-associated virus (AAV) expressing TdTomato. In this protocol, samples were obtained from rats in which CTB was microinjected into the bladder, and AAV-PHP.S was intravenously administered to preferentially and sparsely label peripheral neurons. In this context, neurofascin (paranode marker) identifies myelinated axons.