Aug 23, 2022
Generation of stable cell lines via retroviral or lentiviral transduction
- Rotimi Fasimoye1,
- Dario R Alessi1
- 1Medical Research Council Protein Phosphorylation and Ubiquitylation Unit, School of Life Sciences, University of Dundee, Dow Street, Dundee DD1 5EH, UK
- asap
Protocol Citation: Rotimi Fasimoye, Dario R Alessi 2022. Generation of stable cell lines via retroviral or lentiviral transduction. protocols.io https://dx.doi.org/10.17504/protocols.io.kqdg3prxpl25/v1
License: This is an open access protocol distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited
Protocol status: Working
We use this protocol and it's working
Created: August 16, 2022
Last Modified: May 31, 2024
Protocol Integer ID: 68692
Keywords: HEK293FT, Lentiviral transduction, Stable cell lines, ASAPCRN, production of retrovirus, generation of stable cell line, retrovirus, lentiviral transduction, retrovirus system, lentiviral transduction the ability, subsequent transduction of the cell line, lentivirus system, stable cell line, human cell line, cell genome, transgene, cell line, cell, transgene of interest, generation, subsequent transduction
Funders Acknowledgements:
Aligning Science Across Parkinson’s (ASAP) initiative
Grant ID: ASAP-000463
Abstract
The ability to stably express a protein of interest in cells is critical to study its function. Here, we describe a protocol to generate stable cell lines using a retrovirus system that can be used for a variety of mouse and human cell lines. Our protocol includes the production of retroviruses encoding the transgene of interest in HEK293FT and the subsequent transduction of the cell line that is intended to stably express the protein of interest. The same protocol can also be used to generate stable cell lines using a lentivirus system. It should be noted that when using this method, the transgene of interest will be randomly integrated into the cell genome.
Attachments
ius5bgrdf.docx
114KB
Guidelines
References:
Bozena Szulc, Paulina Sosicka, Dorota Maszczak-Seneczko, Edyta Skurska, Auhen Shauchuk, Teresa Olczak, Hudson H. Freeze and Mariusz Olczak (2020). Biosynthesis of GlcNAc-rich N- and O-glycans in the Golgi apparatus does not require the nucleotide sugar transporter SLC35A3. Journal of Biological Chemistry 295 (48), 16445-63. ISSN 0021-9258. https://doi.org/10.1074/jbc.RA119.012362.
Materials
Cell lines
- HEK293FT for virus packaging and propagation (Invitrogen™. Catalog# R70007).
- HEK293 cells.
Note
Note: This protocol can be used to stably express a protein of interest in a variety of mouse and human cell lines.
Plasmids:
Retrovirus plasmid construct (pBABED vector) or Lentivirus plasmid construct (pLVX or pLJC5 vector) with the gene encoding the protein of interest inserted. As an example for this protocol, we used pBABED-SLC35A2-2xFLAG (DU72094 available at MRCPPU Reagents and Services https://mrcppureagents.dundee.ac.uk). The plasmid should contain an antibiotic selection cassette for the selection of successfully transduced cells (hygromycin, in this case).
pCMV VSV-G. Retrovirus envelope plasmid. (Cell Biolabs. Catlaog# RV-110).
Note
Note: Use Lenti-X HTX Packaging system (Clontech. Catalog# 631247) for Lentivirus based construct.
- pCMV Gag/Pol. Retrovirus Gag/Pol plasmid. (Cell Biolabs. Catalog# RV-111).
Note
Note: Use Lenti-X HTX Packaging system (Clontech. Catalog# 631247) for Lentivirus based construct.
Note
Note: We purify plasmids using a QIAGEN HiSpeed® Plasmid Maxi kit following the manufacturer’s protocols and ensure sterile reagents are used and mixtures prepared in tissue culture hood to avoid contamination.
Media and Reagents:
Growth Media (for HEK293FT and HEK293 cells):
- DMEM, high glucose, no glutamineThermo FisherCatalog #11960085
- 10% (v/v) Fetal Bovine SerumMerck MilliporeSigma (Sigma-Aldrich)Catalog #F7524 ( Batch# BCBW6817)
- 1% (v/v)L-Glutamine (200mM)Thermo Fisher ScientificCatalog #25030024
- 1% (v/v) Penicillin-StreptomycinGibco - Thermo Fisher ScientificCatalog #15140122
Selection Media (for HEK293 cells after retroviral/lentiviral transduction):
Growth Media with 500 ug/ml Hygromycin (InvivoGen. Catalog# ant-hg-5).
Transfection media (for HEK293FT cells):
Opti-MEM™ I Reduced Serum MediumGibco - Thermo Fisher ScientificCatalog #31985062
DPBS no calcium no magnesiumGibco - Thermo Fisher ScientificCatalog #14190169 .
PEI MAX® - Transfection Grade Linear Polyethylenimine Hydrochloride (MW 40000)Polysciences, Inc.Catalog #24765-1 .
Polybrene Infection/Transfection reagentMerck MilliporeSigma (Sigma-Aldrich)Catalog #TR-1003-G .
Equipment:
Incubator with FPI-sensor system and display controller MB1 (BINDER GmbH. Model: CB150. Power Output: 1.40kW, 230V, 6.1 Amp). This incubator has CO2 and O2 control.
Consumables:
- 10 cm Nunc™ Cell Culture/Petri Dishes, 56.7cm2, Nunclon Delta treated, lid, ventThermo FisherCatalog #172931
- 15 ml centrifuge tubes greiner bio-oneCatalog #188271
- Standard 1 mL PIPETTE TIPS 100- 1000 µL BLUE SUITABLE FOR EPPENDORF STERILE 60 PIECES PER RACKgreiner bio-oneCatalog #686271 and 200 µL PIPETTE TIP 10 - 100 µL SUITABLE FOR EPPENDORF 96 PIECES / ST RACKgreiner bio-oneCatalog #685261 respectively.
- Syringe filter (0.45 µm . Sartorius, Item # ST16537-Q)
- Syringes (10 mL ) (Medicina. REF# IVS10. LOT# 19111004)
Troubleshooting
Packaging SLC35A2-2xFLAG plasmid into a Retrovirus system
Note
Note 1: The same protocol can be used to package the gene of interest into a Lentivirus system.
Note 2: All the following steps should be performed under sterile conditions in a CATEGORY 2 biological safety cabinet.
Grow HEK293FT cells to 50-60% confluency in Growth media in a 10 cm Petri Dish.
Prepare a transfection mix in a sterile 1.5 ml Eppendorf tube, containing:
- 3.8 µg pGag/Pol plasmid
- 2.2 µg pVSVG plasmid
- 6 µg pBABE-SLC35A2-2xFLAG plasmid
- 300 µL OptiMem
Prepare PEI mixture in a sterile 1.5 ml Eppendorf tube, containing:
- 20 µL 1 mg/mL PEI Max 40K dissolved in distilled water.
- 300 µL OptiMem.
Incubate each mixture (from steps 2 and 3) separately for ~00:05:00 at Room temperature , then combine.
5m
Mix by vortexing and incubate at Room temperature for 00:30:00 .
30m
Add the mixture dropwise to the cells from step 2 using a P1000 sterile pipette.
Incubate cells at 37 °C for 24:00:00 .
1d
Replace media with 10 mL of fresh Growth Media and incubate cells for a further 24:00:00 at 37 °C .
1d
Collect the culture media from step 8 (that now contains the retroviruses) and pass through a 0.45 µm syringe filter.
Note
Note: The retrovirus infection media from step 9 can be used immediately (as described below) or can be stored at -80 °C for subsequent use.
Retrovirus infection (Transduction) and Selection of cells stably expressing SLC35A2-2xFLAG
2w 2d
Mix 5 mL of retrovirus infection media from step 9 with 5 mL of fresh Growth Media in a sterile 15 ml Eppendorf tube.
Add Polybrene (10 mg/mL stock dissolved in MilliQ water, sterile filtered) to a final concentration of 10 µg/ml .
Gently add to a 10 cm plate of HEK293 cells (or any cell line of interest) at ~60% confluency.
Incubate at 37 °C for 24:00:00 .
1d
Change media to Growth Media and incubate for another 24:00:00 at 37 °C .
1d
To select cells stably expressing SLC35A2-2xFLAG, replace media with 10 mL of freshly prepared Selection Media.
Note
Note 1: Cells that have not been infected should be included as a control for the efficiency of the selection agent.
Note 2: Cells that have not been successfully transduced should start dying 24 hr after the addition of selection media.
Change Selection Media every 24 hr for 72:00:00 - 120:00:00 to remove dead cells. After 5 days, cells stably expressing SLC35A2-2xFLAG should have reached 100% confluency.
1w 1d
Cells can now be passaged and plated for experiments, or frozen down for long term storage in liquid nitrogen (Freezing media: growth media added with 10% v/v DMSO).
Note
Note: Cells should be grown in Selection Media only.
Figure 1: Verification by immunoblotting analysis of the expression of SLC35A2-FLAG that was re-expressed in SLC35A2 knock-out (KO) HEK293 cells using the method described here. Whole cell lysate was prepared from HEK293 cells that are SLC35A2 wildtype (WT), SLC35A2 knock-out (SLC35A2 KO) and SLC35A2 rescue. The lysate was immunoblotted with anti-FLAG antibody (Sigma. Catalog# F1804. RRID:AB262044) to detect the stable expression of SLC35A2-FLAG reintroduced by retrovirus transduction.