Feb 14, 2024
Coupling of TMEM192 antibody to MyOne™ Epoxy Dynabeads™
- Pawel Lis1,
- Daniel Saarela1,
- Dario R Alessi1
- 1MRC-PPU at The University of Dundee
Protocol Citation: Pawel Lis, Daniel Saarela, Dario R Alessi 2024. Coupling of TMEM192 antibody to MyOne™ Epoxy Dynabeads™. protocols.io https://dx.doi.org/10.17504/protocols.io.q26g7p2ykgwz/v1
License: This is an open access protocol distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited
Protocol status: Working
We use this protocol and it's working
Created: February 12, 2024
Last Modified: May 31, 2024
Protocol Integer ID: 95179
Keywords: ASAPCRN, lysosomes, TMEM192, tmem192 antibody, rabbit monoclonal tmem192 antibody, isolation of untagged lysosome, untagged lysosome, lysosome, coupled bead, bead
Funders Acknowledgements:
Aligning Science Across Parkinson's
Grant ID: ASAP-000463
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Abstract
This protocol describes coupling of 600 µg of rabbit monoclonal TMEM192 antibody (Abcam recombinant Anti-TMEM192 antibody [EPR14330-67], BSA and Azide free, ab232600) to 20 mg of MyOne™ Epoxy Dynabeads™ (Invitrogen™, 34001D) to obtain 2 mL of final suspension. The coupled beads generated using this protocol can be used for the isolation of untagged lysosomes from cells and tissues.
Attachments
Guidelines
™
Note
This protocol can be used for coupling of any monoclonal antibody to MyOne™ Epoxy Dynabeads. Antibody to be coupled should be provided in PBS at a concentration of at least 1.2 mg/ml , and must be free of sodium azide, amine-based buffers, glycerol and protein stabilisers (BSA). Maximum binding capacity of MyOne™ Epoxy Dynabeads™ is estimated to be ~20 µg -30 µg of antibody per mg of beads. In this protocol 30 μg per mg of beads is used, to ensure complete saturation of beads.
Materials
Buffers:
| A | B | |
| C1 | 0.1 M Sodium Phosphate (Na2HPO4:NaH2PO4) buffer pH 7.4 | |
| C2 | 3 M Ammonium Sulphate ((NH4)2SO4) in 0.1 M Sodium Phosphate buffer pH 7.4 | |
| HB | 100 mM Glycine pH 11.3, 0.01% Tween-20 | |
| LB | 200 mM Glycine pH 2.8, 0.01% Tween-20 | |
| SB | 50 mM Tris-HCl (NH2C(CH2OH)3·HCl) pH 7.4 with 140 mM NaCl and 0.1% Tween-20 | |
| SBS | 50 mM Tris-HCl (NH2C(CH2OH)3·HCl) pH 7.4 with 140 mM NaCl, 0.1% Tween-20 and 0.2% NaN3 |
Note
All buffers should be stored at 4 °C (up to 1 week) or at -20 °C (long-term storage) and must be brought to Room temperature before being used for coupling.
Protocol
1d 0h 11m 15s
Before opening the vial containing dried magnetic beads, equilibrate to Room temperature .
Thaw the antibody On ice and keep On ice until it is needed in step 8.
Calculate the volume of antibody needed, so that 600 µg is used – this volume should
be ≤500 µL .
Weigh 20 mg beads directly into a fresh low-binding 1.5 ml Eppendorf tube.
Resuspend beads in 1000 µL of sterile Milli-Q water, vortex for 00:00:15 , sonicate in a water bath sonicator for 00:05:00 .
5m 15s
Place vial on a magnetic rack for 00:01:00 , remove water using a pipette.
1m
Repeat steps 5 and 6. After sonication there should be no bead aggregates visible.
Add the required volume of antibody to the vial containing washed beads.
Add buffer C1 up to total volume of 500 µL (C1= 500 - antibody volume). Vortex to resuspend the beads.
Add 500 µL of buffer C2 and vortex.
Incubate in a Thermomixer at 37 °C for 16–24 hours (typically 20:00:00 ) at 1500 rpm (make sure the beads do not settle).
20h
Place on a magnetic rack for 00:01:00 , remove liquid using a pipette.
1m
Resuspend beads in 1000 µL of buffer HB, vortex.
Place on a magnetic rack for 00:01:00 , remove liquid using a pipette.
1m
Resuspend beads in 1000 µL of buffer LB, vortex.
Place on a magnetic rack for 00:01:00 , remove liquid using a pipette.
1m
Resuspend beads in 1000 µL of buffer SB, vortex.
Repeat steps 16 and 17:
- Place on a magnetic rack for 00:01:00 , remove liquid using a pipette.
- Resuspend beads in 1000 µL of buffer SB, vortex.
1m
Place on a magnetic rack for 00:01:00 , remove liquid using a pipette.
1m
Resuspend beads in 1000 µL of buffer SB, vortex.
Incubate in a shaker at Room temperature for 1500 rpm, 00:15:00
Place on a magnetic rack for 00:01:00 , remove liquid using a pipette.
1m
Resuspend beads in 1000 µL of buffer SBS. At this stage beads are at 20 mg/ml and should be stored in the fridge. Beads can be further diluted with buffer SBS to 10 mg/ml , which is the usual working concentration.