Aug 07, 2024

Public workspaceBrain Clarification for Neuromelanin visualisation by OPT

DOI
dx.doi.org/10.17504/protocols.io.n92ld8qdov5b/v1
  • 1VHIR-CIBERNED-ASAP
  • Vilalab Public
  • Nuria
Miquel Vila
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DOI: dx.doi.org/10.17504/protocols.io.n92ld8qdov5b/v1
Protocol Citation: Ariadna Laguna, Miquel Vila 2024. Brain Clarification for Neuromelanin visualisation by OPT. protocols.io https://dx.doi.org/10.17504/protocols.io.n92ld8qdov5b/v1
License: This is an open access protocol distributed under the terms of the Creative Commons Attribution License,  which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited
Protocol status: Working
We use this protocol and it's working
Created: August 06, 2024
Last Modified: August 13, 2024
Protocol Integer ID: 104759
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The protocols.io team notes that research involving animals and humans must be conducted according to internationally-accepted standards and should always have prior approval from an Institutional Ethics Committee or Board.
Abstract
Protocol for the clarification of whole mouse brains to allow neuromelanin visualisation by Optical Projection Tomography
Brain processing
Brain processing
Mice are transcardially perfused in 4% PFA and postfixed in the same fixative overnight
After rinsing several times in PBS, brains are embedded in 1% low melting point agarose in water
Brains are dehydrated in 100% methanol covered in aluminum foil to protect the specimen from light; change the methanol three times during the next 24 h or until the specimen is completely dehydrated
Once dehydrated the brains are incubated during 4 hours shaking in 66% dichloromethane (DCM) /33% methanol at room temperature
The brains are incubated with shaking in 100% DCM 30 minutes twice to complete the delipidation process
The brains are chemically cleared with BABB (a combination of 1 part of benzyl alcohol and 2 parts of benzyl benzoate)
The brains are subsequently immersed in a BABB-filled chamber for Optical projection tomography (OPT) imaging
Brain imaging
Brain imaging
The brains are scanned with transmission light with three different filters (a cyan fluorescent protein -CFP-filter: emission 460-500nm, a green fluorescent protein -GFP- filter: emission 500-550nm and a DSR filter: emission >610nm) using an OPT imaging system mounted on a Leica MZ 16 FA microscope
The brain images are visualised using the open source software Fiji