Aug 01, 2020

Public workspaceBivalent binding of a fully human IgG to the SARS-CoV-2 spike proteins reveals mechanisms of potent neutralization

  • Bei Wang1,
  • Daniel Asarnow2,3,
  • Wen-Hsin Lee1,
  • Ching-Wen Huang1,
  • Bryan Faust2,3,
  • Patricia Miang Lon Ng1,
  • Eve Zi Xian Ngoh1,
  • Markus Bohn3,4,
  • David Bulkley2,3,
  • Andrés Pizzorno5,
  • Hwee Ching Tan1,
  • Chia-Yin Lee1,
  • Rabiatul Adawiyah Minhat1,
  • Olivier Terrier5,
  • Mun Kuen Soh1,
  • Frannie Jiuyi Teo1,
  • Yvonne Yee Chin Yeap1,
  • Yuanyu Hu1,
  • Shirley Gek Kheng Seah6,
  • Sebastian Maurer-Stroh7,
  • Laurent Renia1,8,9,
  • Brendon John Hanson6,
  • Manuel Rosa-Calatrava5,10,
  • Aashish Manglik3,4,11,
  • Yifan Cheng2,3,12,
  • Charles S. Craik3,4,
  • Cheng-I Wang1
  • 1Singapore Immunology Network, A*STAR, Singapore;
  • 2Department of Biochemistry and Biophysics, University of California San Francisco (UCSF) School of Medicine, San Francisco, USA;
  • 3QBI COVID-19 Research Group (QCRG), San Francisco, USA;
  • 4Department of Pharmaceutical Chemistry, University of California San Francisco (UCSF), San Francisco, USA;
  • 5Centre International de Recherche en Infectiologie (CIRI), Université de Lyon, Lyon, France;
  • 6Biological Defence Program, DSO National Laboratories, Singapore;
  • 7Bioinformatics Institute, A*STAR, Singapore;
  • 8School of Biological Sciences, Nanyang Technological University, Singapore;
  • 9Department of Microbiology and Immunology, Yong Loo Lin School of Medicine, National University of Singapore, Singapore;
  • 10VirNext, Faculté de Médecine RTH Laennec, Université de Lyon, Lyon, France;
  • 11Department of Anesthesia and Perioperative Care, University of California San Francisco (UCSF), San Francisco, USA;
  • 12Howard Hughes Medical Institute, University of California San Francisco (UCSF), San Francisco, USA
  • Coronavirus Method Development Community
Icon indicating open access to content
QR code linking to this content
Collection CitationBei Wang, Daniel Asarnow, Wen-Hsin Lee, Ching-Wen Huang, Bryan Faust, Patricia Miang Lon Ng, Eve Zi Xian Ngoh, Markus Bohn, David Bulkley, Andrés Pizzorno, Hwee Ching Tan, Chia-Yin Lee, Rabiatul Adawiyah Minhat, Olivier Terrier, Mun Kuen Soh, Frannie Jiuyi Teo, Yvonne Yee Chin Yeap, Yuanyu Hu, Shirley Gek Kheng Seah, Sebastian Maurer-Stroh, Laurent Renia, Brendon John Hanson, Manuel Rosa-Calatrava, Aashish Manglik, Yifan Cheng, Charles S. Craik, Cheng-I Wang 2020. Bivalent binding of a fully human IgG to the SARS-CoV-2 spike proteins reveals mechanisms of potent neutralization. protocols.io https://dx.doi.org/10.17504/protocols.io.bi35kgq6
License: This is an open access collection distributed under the terms of the Creative Commons Attribution License,  which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited
Protocol status: Working
We use this protocol in our workspace and it is working.
Created: July 28, 2020
Last Modified: August 03, 2020
Collection Integer ID: 39773
Keywords: SARS-CoV-2, COVID-19, SARS-CoV, coronavirus, spike protein, monoclonal antibody, phage display
Abstract
In vitro antibody selection against pathogens from naïve combinatorial libraries can yield various classes of antigen-specific binders that are distinct from those evolved from natural infection. Also, rapid neutralizing antibody discovery can be made possible by a strategy that selects for those interfering with pathogen and host interaction. Here we report the discovery of antibodies that neutralize SARS-CoV-2, the virus responsible for the COVID-19 pandemic, from a highly diverse naïve human Fab library. Lead antibody 5A6 blocks the receptor binding domain (RBD) of the viral spike from binding to the host receptor angiotensin converting enzyme 2 (ACE2), neutralizes SARS-CoV-2 infection of Vero E6 cells, and reduces viral replication in reconstituted human nasal and bronchial epithelium models. 5A6 has a high occupancy on the viral surface and exerts its neutralization activity via a bivalent binding mode to the tip of two neighbouring RBDs at the ACE2 interaction interface, one in the “up” and the other in the “down” position, explaining its superior neutralization capacity. Furthermore, 5A6 is insensitive to several spike mutations identified in clinical isolates, including the D614G mutant that has become dominant worldwide. Our results suggest that 5A6 could be an effective prophylactic and therapeutic treatment of COVID-19.
Files
Protocol
Icon representing the file anti-SARS-CoV-2 spike RBD antibody discovery from phage display library
Name
anti-SARS-CoV-2 spike RBD antibody discovery from phage display library
Version 1
,
Bei Wang
Protocol
Icon representing the file IgG expression and purification
Name
IgG expression and purification
Version 1
,
Bei Wang
Protocol
Icon representing the file Antibody characterizations by BioLayer Interferometry (BLI)
Name
Antibody characterizations by BioLayer Interferometry (BLI)
Version 1
,
Bei Wang
Protocol
Icon representing the file Antibody neutralization assay with SARS-CoV-2 and SARS-CoV pseudovirus
Name
Antibody neutralization assay with SARS-CoV-2 and SARS-CoV pseudovirus
Version 1
,
Bei Wang