
| Gene | Primer | Primer sequence (5' - 3') | Tm | Product length (pos. in the reference sequence) | |
| Hsp70 | Hsp70_broad_F | TGCGTCTAAGAGATTGCTGGG | 56 °C | 824 (216-1039) | |
| Hsp70_broad_R | GCATTCGTGTCATTCCACCC |
| reagent | 1× | 5× | |
| DreamTaq Hot Start PCR Master Mix | 12.5 μL | 62.5 µl | |
| Forward primer 10x | 1 µl | 5 µl | |
| Reverse primer 10x | 1 µl | 5 µl | |
| Template DNA | 2 µl | 10 µl | |
| ddH20 | 8.5 µl | 42.5 µl | |
| Total volume | 25 μL (23 µl mix + 2 µl DNA) |
| step | temperature | step duration | repeats | |
| initialization | 95 °C | 3 min | ||
| denaturation | 95 °C | 30 s | 40 × | |
| annealing | 56 °C (Hsp-broad) | 30 s | ||
| elongation | 72 °C | 60 s | ||
| final elongation | 72 °C | 5 min | ||
| cooling | 8 °C | ∞ | ||
| Gene | Primer | Primer sequence (5' - 3') | Product length (pos. in the reference sequence) | |
| Hsp70 | Hsp70_F | GGGATTACAAGTGCTTAGAGTGATT | 65 bp (498-562) | |
| Hsp70_R | TGTCAAGCCCATAAGCAAGTG |
| 1 | 2 | 3 | 4 | 5 | |
| A | Std1 | Std1 | Std1 | Unk1 | Unk1 |
| B | Std2 | Std2 | Std2 | Unk2 | Unk2 |
| C | Std3 | Std3 | Std3 | Unk3 | Unk3 |
| D | Std4 | Std4 | Std4 | Unk4 | Unk4 |
| E | Std5 | Std5 | Std5 | Unk5 | Unk5 |
| F | Std6 | Std6 | Std6 | Unk6 | Unk6 |
| G | Std7 | Std7 | Std7 | Unk7 | Unk7 |
| H | Std8 | Std8 | Std8 | Unk8 | Unk8 |
| 6 | 7 | 8 | 9 | 10 | |
| A | Unk1 | Unk9 | Unk9 | Unk9 | Neg1 |
| B | Unk2 | Unk10 | Unk10 | Unk10 | Unk17 |
| C | Unk3 | Unk11 | Unk11 | Unk11 | Unk18 |
| D | Unk4 | Unk12 | Unk12 | Unk12 | Unk19 |
| E | Unk5 | Unk13 | Unk13 | Unk13 | Unk20 |
| F | Unk6 | Unk14 | Unk14 | Unk14 | Unk21 |
| G | Unk7 | Unk15 | Unk15 | Unk15 | Unk22 |
| H | Unk8 | Unk16 | Unk16 | Unk16 | NTC |
| 11 | 12 | |
| A | Neg1 | Neg1 |
| B | Unk17 | Unk17 |
| C | Unk18 | Unk18 |
| D | Unk19 | Unk19 |
| E | Unk20 | Unk20 |
| F | Unk21 | Unk21 |
| G | Unk22 | Unk22 |
| H | NTC | NTC |
| Sample category | Number of samples | Number of replicates | Number of samples × number of repliactes | Total numer of well plates | Total + 15% | |
| Unknown sample | 7 | 3 | 21 | 45 | 52 | |
| Standard | 7 | 3 | 21 | |||
| Blank | 1 | 3 | 3 |
| Mix (µl) | 1× | 52× | |
| SYBR Green | 10 | 520 | |
| Hsp70_F primer 20x | 0.8 | 41.6 | |
| Hsp70_R primer 20x | 0.8 | 41.6 | |
| ddH2O | 3.4 | 176.8 |
| temperature | duration | repeats | |
| 98 °C | 3 min | ||
| 98 °C | 15 s | 40× | |
| 60 °C | 30 s | ||
| melting curve | |||
| 65-95 °C in 0.5 °C increments | 5 s/ step |