This protocol\u00a0outlines our bacteriophage\/virus taxonomy analyses. This analysis includes profiles for the average order relative abundance for each site, the phage species relative abundance profiles for each patient, and the relative abundance of specific species between sites. Intermediate files are also included with the publication, and the paths are specified below. Based on the methods from the following publication:Hannigan, Geoffrey D., et al. "The Human Skin Double-Stranded DNA Virome: Topographical and Temporal Diversity, Genetic Enrichment, and Dynamic Associations with the Host Microbiome."\u00a0mBio\u00a06.5 (2015): e01578-15.