Commands for hands-on component of QIIME, which should be run from a local installation. Details can be found online at http://qiime.org/install/index.html.The files used in this hands-on component are also available the virtual machine (details in 'Start Instructions'), but you will need to upload them to your Google Drive or Dropbox from within the VM in order to have them available for QIIME, which is installed locally.